PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_22492
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NAC
Protein Properties Length: 321aa    MW: 37046.6 Da    PI: 7.4568
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_22492genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.81e-5381351128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 lppGfrFhPtdeel+ +yL+k++e+ ++++ ++i++vdiyk++PwdLp+k+k +++ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++  ++e
  PEQU_22492   8 LPPGFRFHPTDEELILHYLCKRLEAAPFPA-SIIADVDIYKFNPWDLPEKAKFGDREWYFFSPRDRKYPNGIRPNRAAASGYWKATGTDKPITKGeGNE 105
                 79****************************.89***************99999****************************************986778 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 ++g+kk Lvfy+g+ pkg+kt+W+mheyrl
  PEQU_22492 106 NIGVKKALVFYRGKPPKGVKTNWIMHEYRL 135
                 8***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-645168IPR003441NAC domain
PROSITE profilePS5100561.9798168IPR003441NAC domain
PfamPF023654.8E-279135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSSGPPYLPP GFRFHPTDEE LILHYLCKRL EAAPFPASII ADVDIYKFNP WDLPEKAKFG  60
DREWYFFSPR DRKYPNGIRP NRAAASGYWK ATGTDKPITK GEGNENIGVK KALVFYRGKP  120
PKGVKTNWIM HEYRLVESQN RISKSRDVKP REDSMRLDDW VLCRIYQKNN YHSSADQERE  180
DSAGDEASMQ SSMINKKMHK SFSLSELLIE EADFSLLSRL LETPSNTTVL DQAPFQNTNL  240
IRPLTEYIGS TSSCYLTSQV QQSEGSGFVP ENSSKRQRMS ANCDFDEFAD YMKKFNICSS  300
YNYDQLSKQF DCSQPFFYQH L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-71817015170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020578932.10.0NAC transcription factor 29-like
SwissprotQ84TD63e-88NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A2I0W0Z31e-172A0A2I0W0Z3_9ASPA; NAC transcription factor NAM-2
STRINGGSMUA_Achr4P02380_0011e-106(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-90NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]