PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_21779
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family bHLH
Protein Properties Length: 294aa    MW: 33208.3 Da    PI: 7.0404
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_21779genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-09207249855
                 HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + + RR+ri +++  L++l+P+       K++ +++LekA+ Y+k Lq
  PEQU_21779 207 AAKIRRERISERLKILQDLVPNG-----SKVDLVTMLEKAISYVKFLQ 249
                 6699******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.939199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-12200256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.77E-11201253No hitNo description
SuperFamilySSF474593.4E-13203259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-11205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6206249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAVAKGHGLD FSYLEQLGFK CQRDFMPEDE GCAKNHPSAL PALSDQSNMC TNSPLMLLEE  60
ISSSQEAQTA FNFKAGEEHW MHSNSTVLSF EQKFGYGENC INWIEPNNHD YQMNHYLNKR  120
SGSDSSEIQA ADYGLMDNQQ CQNRFKIFYS SISSGEDFES VGRQQHGLQK RQFLESDMQG  180
SKKHCANNKK QSKAKIIATS KDPQSIAAKI RRERISERLK ILQDLVPNGS KVDLVTMLEK  240
AISYVKFLQL QVKVLATDEF WPAQGGKAPE VSHVKEAIDA ILSSHQQRNS NCKF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020596015.10.0transcription factor BEE 1-like
TrEMBLA0A2I0WXX31e-166A0A2I0WXX3_9ASPA; Transcription factor bHLH086
STRINGXP_008782563.19e-72(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.12e-54ROOT HAIR DEFECTIVE6