PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_21260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | TCP | ||||||||
Protein Properties | Length: 275aa MW: 30443.7 Da PI: 11.4017 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 59.4 | 1.4e-18 | 125 | 162 | 7 | 44 |
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkd 44 +++++hTkv+gR+RRvRl+ caar+F+L++eLG+++d PEQU_21260 125 SSKDRHTKVNGRGRRVRLPPICAARIFQLTRELGHKSD 162 689**********************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.2E-15 | 125 | 162 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 11.129 | 126 | 180 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MNMIRASATH LDRFSKICRP VKIIIQYPET LDFLFFPVPE FLSPYHKYST SPLLLSLHKT 60 LAMPGPTSLT LMPSPPSPSP PSPPASDLLI YNPTAVHSSG AITAEPLQMR SEMADVRGKK 120 REGGSSKDRH TKVNGRGRRV RLPPICAARI FQLTRELGHK SDRVAAAAGG TLYPCSHRQW 180 NQPAPFRHHC HLISGTMSSF PASTAGAAHR LLSVQWNYGL RCRSEGLWFL RDVRRRUGFG 240 GGIPAYAVLH SNADASGERR RUGQPRRHRA TSGGL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020582531.1 | 1e-101 | LOW QUALITY PROTEIN: transcription factor PCF1-like | ||||
TrEMBL | A0A1D6ZNH0 | 1e-100 | A0A1D6ZNH0_PHAEQ; TCP transcription factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2864 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47620.1 | 6e-18 | TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 |