PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_21248 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 320aa MW: 34827.9 Da PI: 6.3684 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.9 | 7.4e-16 | 31 | 78 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd ++ G g+W + ++ g++R++k+c++rw +yl PEQU_21248 31 KGPWTPEEDKILVDFIQSNGHGSWCSLPKLAGLRRCGKSCRLRWTNYL 78 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.2 | 6.1e-16 | 84 | 129 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++ +++++ G++ W+tIa+ ++ gRt++++k++w+++l PEQU_21248 84 RGPFTSEEQKSIIQLHGIVGNK-WSTIAAQLP-GRTDNEIKNYWNTHL 129 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-22 | 25 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.977 | 26 | 78 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.86E-30 | 28 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-13 | 30 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-14 | 31 | 78 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.23E-10 | 33 | 78 | No hit | No description |
PROSITE profile | PS51294 | 24.851 | 79 | 133 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-26 | 82 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-14 | 83 | 131 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-14 | 84 | 129 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.39E-10 | 86 | 129 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MVINGVGAAG PGAFNSYSKP ALTLSKQGLK KGPWTPEEDK ILVDFIQSNG HGSWCSLPKL 60 AGLRRCGKSC RLRWTNYLRP DIKRGPFTSE EQKSIIQLHG IVGNKWSTIA AQLPGRTDNE 120 IKNYWNTHLK KRLLRMGINP DTYAPSSPSS ASTASFPPTR HMTQWESARL EAEARLSRES 180 LLFSSASSAA VGGNISTTDS EPPDDSLLTA KPQSDFFLRI WNSEIGDAFR NPQRTLRAEE 240 ATTTAPMTES KSCTSAGGEV PSGPPDSSSS NEVDEASDET YQLYLNLTGD ELGLFHGQMG 300 GFSLFSADLN DAVFLDTAFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-28 | 29 | 133 | 5 | 108 | B-MYB |
1mse_C | 1e-27 | 29 | 133 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-27 | 29 | 133 | 2 | 105 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00114 | ampDAP | Transfer from AT3G61250 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020582524.1 | 0.0 | transcription repressor MYB6-like | ||||
Swissprot | Q9M2D9 | 2e-94 | MYB17_ARATH; Transcription factor MYB17 | ||||
TrEMBL | A0A2I0WL19 | 1e-165 | A0A2I0WL19_9ASPA; Myb-related protein Myb4 | ||||
STRING | XP_008794182.1 | 1e-131 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5409 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 3e-77 | myb domain protein 17 |