PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_20883

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

MYB_related

Protein Properties

Length: 601aa MW: 66548.2 Da PI: 8.7309

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_20883	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.2	1.1e-14	90	134	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE++++++a+ ++G g W +I +++g ++++ q++s+ qk+ PEQU_20883 90 REKWTDEEHKKFLEAICLYGRG-WIKIQEHVG-TKSATQIRSHAQKF 134 789*****************.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.46E-16	84	137	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.89	85	139	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-7	87	134	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.9E-14	88	138	IPR006447	Myb domain, plants
SMART	SM00717	6.6E-9	89	137	IPR001005	SANT/Myb domain
Pfam	PF00249	8.5E-13	90	133	IPR001005	SANT/Myb domain
CDD	cd00167	1.48E-8	92	135	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence Send to blast
MEFGVPTLKH ISPATTPSMN LLVYKPIAKG EVKHPGSRGQ GEWRTTSGPQ GPGRMHSCDA 60 LFIRWIFPTK GRWRWAAHRR RKPYTITKQR EKWTDEEHKK FLEAICLYGR GWIKIQEHVG 120 TKSATQIRSH AQKFFLKKGV GGMNLGHPNG LEIPPPRARR KPFHPSNEKP VAGATEESSN 180 QALRRWNSYP SLYHGNNSAH PLPEHIPMLE ESVKKTGKYL HLFEMHGNFT NPQMKFTSEE 240 RNQTLEKLDK PYASPKHTVQ GEGSYQNMVL PQLTGSKYRC GGTSSSFIEQ PDANADLSLS 300 LSHTSSVTYM TKDPVISSIQ QAVPSNSLCD DCLEDENASI ALSGFTANSF PKLHADPSTA 360 ASLLEHTFLD ISAHSDTNIN VGKARDERGN ISPSIKAIIA ATVEAAAAWW RLNGLLPSPS 420 QSSTTSATQT MVQNLTKEPK DLKCDSGPKK NSKCSACSAL LEPSSSSSPE TVEKIRVDRP 480 EKHPNQHMLS SVVKGNEEIS GFPVKKKQDT CSNTSPFTEA VSFGQLKDAE IYSKPYNGTP 540 AFEALFSQNV LMPQSFGLLL MDDHKLDLNL GGKEALELQI DINRKTFTDN VFVPAEFGLE 600 E

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence Send to blast

MEFGVPTLKH ISPATTPSMN LLVYKPIAKG EVKHPGSRGQ GEWRTTSGPQ GPGRMHSCDA  60
LFIRWIFPTK GRWRWAAHRR RKPYTITKQR EKWTDEEHKK FLEAICLYGR GWIKIQEHVG  120
TKSATQIRSH AQKFFLKKGV GGMNLGHPNG LEIPPPRARR KPFHPSNEKP VAGATEESSN  180
QALRRWNSYP SLYHGNNSAH PLPEHIPMLE ESVKKTGKYL HLFEMHGNFT NPQMKFTSEE  240
RNQTLEKLDK PYASPKHTVQ GEGSYQNMVL PQLTGSKYRC GGTSSSFIEQ PDANADLSLS  300
LSHTSSVTYM TKDPVISSIQ QAVPSNSLCD DCLEDENASI ALSGFTANSF PKLHADPSTA  360
ASLLEHTFLD ISAHSDTNIN VGKARDERGN ISPSIKAIIA ATVEAAAAWW RLNGLLPSPS  420
QSSTTSATQT MVQNLTKEPK DLKCDSGPKK NSKCSACSAL LEPSSSSSPE TVEKIRVDRP  480
EKHPNQHMLS SVVKGNEEIS GFPVKKKQDT CSNTSPFTEA VSFGQLKDAE IYSKPYNGTP  540
AFEALFSQNV LMPQSFGLLL MDDHKLDLNL GGKEALELQI DINRKTFTDN VFVPAEFGLE  600
E

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020576078.1	0.0	protein CCA1-like isoform X2
TrEMBL	A0A2I0VK84	1e-174	A0A2I0VK84_9ASPA; Protein LHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18330.1	3e-26	MYB_related family protein