PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_20514
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 409aa    MW: 45923.3 Da    PI: 7.0828
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_20514genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
       PEQU_20514 14 KGLWSPEEDEKLLKHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding44.14.8e-1467110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++
       PEQU_20514  67 RGTFSQQEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110
                      899*******************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-27664IPR009057Homeodomain-like
PROSITE profilePS5129425.299965IPR017930Myb domain
SuperFamilySSF466893.22E-2912108IPR009057Homeodomain-like
SMARTSM007172.1E-131363IPR001005SANT/Myb domain
PfamPF002492.2E-151461IPR001005SANT/Myb domain
CDDcd001675.46E-121761No hitNo description
Gene3DG3DSA:1.10.10.606.9E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129419.97666116IPR017930Myb domain
SMARTSM007172.3E-1266114IPR001005SANT/Myb domain
PfamPF002495.6E-1367110IPR001005SANT/Myb domain
CDDcd001675.69E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MGRHSCCHKQ KLRKGLWSPE EDEKLLKHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQRG  120
IDPNTHKSLS EAENPEENKV STSSERNSIL YTGESLQQTV LQPASSLMQS AEQNSISAKE  180
FIIDNPTACL RSSSNSISCF PLPQLNYSTS ASASLPFNQN PFLWFNQNCR VFDMNPELSC  240
SSISTVISNS IMSNSMDLKS PVDLSSPCFP PPCTGAPIFP YLEAGNPSRC SSGSSSSSSI  300
FDSGLLSWPD LSTEKETHFH LQGDPEDLKW SEYLQGNFPV SSILQTQNQP LYGSSDAISQ  360
SHFEIENSNL WHQNQQPQHH QNQPQQPPPQ TADLYGKEFQ RFSTLFGQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7694740.0KF769474.1 Phalaenopsis equestris MYB transcription factor 9 (MYB9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020576892.10.0transcription factor MYB86-like
TrEMBLA0A096ZX690.0A0A096ZX69_PHAEQ; MYB transcription factor 9
STRINGXP_008775654.11e-138(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23103794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.31e-87myb domain protein 55