PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_20333
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 245aa    MW: 27491.3 Da    PI: 9.6182
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_20333genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W + Ed+ll+ +++ +G g+Wk+++++ g++R++k+c++rw++yl
       PEQU_20333 14 KGAWNAHEDKLLISCIQVHGEGSWKSVPQKAGLNRCGKSCRLRWLNYL 61
                     79********************************************97 PP
2Myb_DNA-binding52.41.2e-1668111247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g++++eE++l+++++k+ G++ W++Ia +++ gRt++++k++w++ 
       PEQU_20333  68 GNFSEEEEDLIIRLHKLIGNR-WSLIAGRIP-GRTDNEIKNYWNTT 111
                      89*******************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.104961IPR017930Myb domain
SuperFamilySSF466894.59E-2912108IPR009057Homeodomain-like
SMARTSM007178.6E-131363IPR001005SANT/Myb domain
PfamPF002499.9E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-221568IPR009057Homeodomain-like
CDDcd001671.93E-91661No hitNo description
PROSITE profilePS5129424.91462116IPR017930Myb domain
SMARTSM007172.1E-1566114IPR001005SANT/Myb domain
PfamPF002492.4E-1568111IPR001005SANT/Myb domain
CDDcd001677.06E-1269112No hitNo description
Gene3DG3DSA:1.10.10.605.7E-2569116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRNASSSSN GLTKGAWNAH EDKLLISCIQ VHGEGSWKSV PQKAGLNRCG KSCRLRWLNY  60
LRPNIKHGNF SEEEEDLIIR LHKLIGNRWS LIAGRIPGRT DNEIKNYWNT TLGKKLRNQQ  120
RQTKADAALP TSSPPYKNDR MAEIIRPKAV ISTKSLPTSS PPYKNDRTAE MIRPKAVNST  180
KSYPTNLPNV PSPSAAAVAV EAAAQKMVIE ERNNGAAIED WFLDFDLDCL DDVMMFREMD  240
IDGWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-26121162105MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-26121162105C-Myb DNA-Binding Domain
1msf_C4e-26121162105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7694770.0KF769477.1 Phalaenopsis equestris MYB transcription factor 12 (MYB12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020578104.11e-135transcription repressor MYB6-like
TrEMBLA0A096ZX551e-143A0A096ZX55_PHAEQ; MYB transcription factor 12
STRINGXP_008787967.11e-64(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.18e-55myb domain protein 3