PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_19801 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | Nin-like | ||||||||
Protein Properties | Length: 136aa MW: 16318.3 Da PI: 9.8509 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 80.1 | 2.3e-25 | 6 | 54 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e+ le+++ yF++pi+ AA e++++lTvLK++CR++GI RWPhRk+ksl PEQU_19801 6 ELGLEEIRGYFNMPITRAAMEMNIGLTVLKKRCRELGITRWPHRKLKSL 54 7899*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.507 | 1 | 76 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.6E-21 | 7 | 54 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MMRSCELGLE EIRGYFNMPI TRAAMEMNIG LTVLKKRCRE LGITRWPHRK LKSLNTLITN 60 IQEIGKCSSD ENIKEELKSL EKHKRLMEEN PEIQLTEETK KLRQACFKAN YKRRVAMQRP 120 YLQPIQYIYI YIYIYL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020700072.1 | 2e-78 | protein RKD2-like | ||||
Swissprot | Q9LVU8 | 5e-42 | RKD4_ARATH; Protein RKD4 | ||||
TrEMBL | A0A2I0VVL6 | 3e-64 | A0A2I0VVL6_9ASPA; Protein RKD4 | ||||
STRING | GSMUA_Achr4P08610_001 | 8e-52 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 9e-44 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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