PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_18781
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 367aa    MW: 40210.5 Da    PI: 7.6164
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_18781genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.91.7e-08122142526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C++f++ G Ck+Gd C +aHg
  PEQU_18781 122 ACPDFRK-GNCKRGDACEYAHG 142
                 7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.85E-5115146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155117144IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-7117143IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6122142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5122144IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.343152176IPR000571Zinc finger, CCCH-type
SMARTSM0035612152175IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MMGEGIHHNL MVDVPPWSMS DDQLTPSSLG GCVAGDYLLS DAVMASLQRY LPSNEAADMD  60
DAADLADPPI DAYSCDEFRM YEFKIRRCAR GRSHDWTECP YAHPGEKARR RDPKIYLYSG  120
TACPDFRKGN CKRGDACEYA HGVFECWLHP SRYRTQPCKD GTACRRRVCF FAHTPEQLRV  180
LPSPQKQSPR AVLESYDGSP MRAHAVDAYF GKGLISSSPN YSLISPPMSP TADSPPISPA  240
RRGSWPVVSP VNEVLASLRK LQLSKVKNVP CSSWDGMQGG GSALRMKPGF CSLPSTPTRA  300
LASAAVAKGE SMGSEGFNEG GEPVERVESG RALRAKMYER LSRESGLGHV EVGSAPDIGW  360
VSELVKW
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020585087.10.0zinc finger CCCH domain-containing protein 2-like
SwissprotQ9FU271e-117C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A2I0VF600.0A0A2I0VF60_9ASPA; Zinc finger CCCH domain-containing protein 2
STRINGXP_010244375.11e-130(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-101C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]