PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_18754 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | GATA | ||||||||
Protein Properties | Length: 183aa MW: 20637 Da PI: 10.866 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.2 | 4.6e-18 | 59 | 92 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C ttkTplWR+gp g+k+LCnaCG+++ k + PEQU_18754 59 CSDCSTTKTPLWRSGPLGPKSLCNACGIKQMKAR 92 ****************************987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 9.03E-14 | 52 | 99 | No hit | No description |
SMART | SM00401 | 1.5E-15 | 53 | 106 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.1E-14 | 57 | 91 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.991 | 57 | 86 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.09E-11 | 58 | 103 | No hit | No description |
Pfam | PF00320 | 1.3E-15 | 59 | 92 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 59 | 84 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MSSKMRIMRK FVCSEQKTVR RIRRRRRRCQ QIQDDQRKEG NKDQSSCESS NNGGINRVCS 60 DCSTTKTPLW RSGPLGPKSL CNACGIKQMK ARKAMSSAAQ SSKLQYPVVP IKPEKNQSSK 120 VDCSIPFKKR CRFVATAEAA QRKLSFEDMP VALKERLVAL KGVFPQDEKD AAILLMALAH 180 RDS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 19 | 26 | RRIRRRRR |
2 | 19 | 27 | RRIRRRRRR |
3 | 20 | 27 | RIRRRRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020585085.1 | 1e-132 | putative GATA transcription factor 22 | ||||
TrEMBL | A0A2I0X397 | 2e-86 | A0A2I0X397_9ASPA; GATA transcription factor 22 | ||||
STRING | XP_008780491.1 | 4e-37 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1893 | 38 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 3e-26 | cytokinin-responsive gata factor 1 |