PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_18185 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 152aa MW: 17219.8 Da PI: 8.4765 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.6 | 4.1e-38 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C+ +C++ pyf ++p+kfa++hk++Gasnv+k+l ++pe +r d+++slvyeA+ r++dPvyG++g i lq+q+++l++el +lke PEQU_18185 7 PCAACKLLRRRCVLECPFFPYFSPSEPQKFAATHKVYGASNVSKMLMKVPEAQRADTARSLVYEANLRLQDPVYGCMGAIIVLQKQVNELETELRRLKE 105 7*********************************************************************************************99998 PP DUF260 100 e 100 e PEQU_18185 106 E 106 7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.745 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-38 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 152 aa Download sequence Send to blast |
VLNTTTPCAA CKLLRRRCVL ECPFFPYFSP SEPQKFAATH KVYGASNVSK MLMKVPEAQR 60 ADTARSLVYE ANLRLQDPVY GCMGAIIVLQ KQVNELETEL RRLKEELLKN SYSVIPSSTH 120 GSSTEQWPQL PEFPSASSSM FINTEWQNQN MK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-40 | 3 | 109 | 7 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-40 | 3 | 109 | 7 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020575343.1 | 1e-112 | LOB domain-containing protein 15-like isoform X1 | ||||
Swissprot | Q9AT61 | 2e-53 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A2I0VFL7 | 7e-71 | A0A2I0VFL7_9ASPA; LOB domain-containing protein 13 | ||||
STRING | XP_009369256.1 | 2e-57 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30340.1 | 2e-50 | LOB domain-containing protein 13 |
Publications ? help Back to Top | |||
---|---|---|---|
|