PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_17923 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | DBB | ||||||||
Protein Properties | Length: 161aa MW: 18004.6 Da PI: 7.0188 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.1 | 6.4e-07 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ ++ + ++ C ++ lC+ C + H+ H++v PEQU_17923 4 QCDVCGVETASVLCYADEAALCRRCDEGVHSAnklagkHRRV 45 7*****999*********************667888888766 PP | |||||||
2 | zf-B_box | 25.5 | 2.7e-08 | 55 | 87 | 3 | 35 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 + C+ ++ek+ fC+d + lC+dC +++H PEQU_17923 55 LPLCDICKEKKGFVFCQDERAILCKDCDFQIHA 87 579*****************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.627 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.5E-11 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.5E-6 | 4 | 45 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.18E-7 | 5 | 47 | No hit | No description |
SMART | SM00336 | 3.6E-8 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.631 | 53 | 95 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.7E-5 | 55 | 87 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.05E-6 | 56 | 87 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MKLQCDVCGV ETASVLCYAD EAALCRRCDE GVHSANKLAG KHRRVFLLPH PLRTLPLCDI 60 CKEKKGFVFC QDERAILCKD CDFQIHATNT NTSKHMRFLF SGIRLSTTPI PSAFSSTTEN 120 DNSCRSTISD YLMNMLPGWR VDDFLFDDVA STGNFSGCHL V |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020592557.1 | 1e-118 | B-box zinc finger protein 21-like | ||||
Swissprot | Q9LQZ7 | 5e-42 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A2I0VF23 | 3e-70 | A0A2I0VF23_9ASPA; Putative salt tolerance-like protein | ||||
STRING | GSMUA_Achr11P21780_001 | 4e-53 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2392 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 2e-44 | salt tolerance homolog2 |