PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_17567
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family SBP
Protein Properties Length: 367aa    MW: 40651.2 Da    PI: 8.5844
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_17567genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.11.4e-39156234178
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEE.TTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlv.sgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 +Cq+egC+adls ak+yhrrhkvC++hskapvv+   g++qrfCqqCsrfh l efD++krsCr+rLa+hn+rrrk+qa
  PEQU_17567 156 RCQAEGCRADLSGAKHYHRRHKVCDFHSKAPVVFFpGGVQQRFCQQCSRFHGLAEFDDSKRSCRKRLAEHNRRRRKPQA 234
                 6********************************963689*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-32149219IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.299154232IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-36155235IPR004333Transcription factor, SBP-box
PfamPF031102.2E-30157231IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MMNSSHTTET YAASPFMSFV GLEASGCTQN TQKHQLWDWD SSNTFSSTSH SLPFYPNHTI  60
PSDLLDPPPP PLFPSNNPFP FYFPPPPPPP QPSTTIISDY PRSSGFFKLE NGLATTGFGG  120
LAGARIGLNL GHRTYFSSVD HQLMLFGRSA HHQPPRCQAE GCRADLSGAK HYHRRHKVCD  180
FHSKAPVVFF PGGVQQRFCQ QCSRFHGLAE FDDSKRSCRK RLAEHNRRRR KPQAQPTTKA  240
SIVKSNNTPP IPSDGNASLE VQQKKAVVQF TSTTGSALSL AGGVGVSTTT HEHQKVSTFM  300
SAEEKASEYQ QQFQSHFTSP CSSSNTFFPH QNFFNEGSHS GGGSEMTHHN QTSILQLGQA  360
MFEWDFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-291572311184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214231KRSCRKRLAEHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020580341.10.0squamosa promoter-binding-like protein 10
TrEMBLA0A2I0W1Q00.0A0A2I0W1Q0_9ASPA; Squamosa promoter-binding-like protein 8
STRINGXP_008775519.12e-79(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.19e-45squamosa promoter binding protein-like 8