PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_17550

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

GRAS

Protein Properties

Length: 384aa MW: 41988.6 Da PI: 5.1031

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_17550	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	354.1	2.1e-108	1	339	6	374
GRAS 6 lecAeavssgdlelaqalLarlselaspdgd..pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 ++cA+ ++ gd+ a++l+ +++ l g+ + ++a yf AL +rl+ +p + + e ++ f+e sP+l+f+h+taNqaI PEQU_17550 1 MSCADSINRGDHPSASTLIREMQILLPHVGTafGIGKVAGYFIDALDRRLLY---------RPPPPA-----EDEILYRHFYESSPYLTFAHFTANQAI 85 68*********************99999734679**********98.........333333.....33457799*************** PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 le+++g ++vH+iD+++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+ +++e+g rLa++A++++vpf+f++ l++++++ +r++pgE+ PEQU_17550 86 LESFNGRDCVHVIDLSLMHGLQWPALIQALALRPGGPPYLRLTGFGP------PAVREVGCRLADLARSVHVPFSFTL-----LDEIQPNFFRCEPGET 173 *******************************************......77******************9.....5*********** PP GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 +aVn+vlqlhr+l++++s + +d+vL + l+P++++vveqeadhn++ Fl+rf+eal yysa+fdsle+ ++ + +l++ei+n+v+c PEQU_17550 174 VAVNSVLQLHRFLSDPGSPAP-IDSVLGWLTALRPRIITVVEQEADHNRPAFLDRFTEALFYYSAMFDSLESA------AAGAGAELYLQKEICNIVCC 265 *********88888777.********************************************999......455556678******* PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 g+er+erhe l++Wr r++eaG+ pv+++++a+ qa++ll +++dgy vee +g+l+l W++r+++s SaWr PEQU_17550 266 DGEERVERHEPLASWRTRFGEAGLLPVHFGSNAYRQASMLLTLFSGDGYGVEEMEGCLTLSWHGRSIMSSSAWR 339 ***********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	52.566	1	319	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.3E-106	1	339	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MSCADSINRG DHPSASTLIR EMQILLPHVG TAFGIGKVAG YFIDALDRRL LYRPPPPAED 60 EILYRHFYES SPYLTFAHFT ANQAILESFN GRDCVHVIDL SLMHGLQWPA LIQALALRPG 120 GPPYLRLTGF GPPAVREVGC RLADLARSVH VPFSFTLLDE IQPNFFRCEP GETVAVNSVL 180 QLHRFLSDPG SPAPIDSVLG WLTALRPRII TVVEQEADHN RPAFLDRFTE ALFYYSAMFD 240 SLESAAAGAG AELYLQKEIC NIVCCDGEER VERHEPLASW RTRFGEAGLL PVHFGSNAYR 300 QASMLLTLFS GDGYGVEEME GCLTLSWHGR SIMSSSAWRC GGDVVAPPPA DDVCVNRWSG 360 GMSGESSGTD GRVGGIGSER GANL

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MSCADSINRG DHPSASTLIR EMQILLPHVG TAFGIGKVAG YFIDALDRRL LYRPPPPAED  60
EILYRHFYES SPYLTFAHFT ANQAILESFN GRDCVHVIDL SLMHGLQWPA LIQALALRPG  120
GPPYLRLTGF GPPAVREVGC RLADLARSVH VPFSFTLLDE IQPNFFRCEP GETVAVNSVL  180
QLHRFLSDPG SPAPIDSVLG WLTALRPRII TVVEQEADHN RPAFLDRFTE ALFYYSAMFD  240
SLESAAAGAG AELYLQKEIC NIVCCDGEER VERHEPLASW RTRFGEAGLL PVHFGSNAYR  300
QASMLLTLFS GDGYGVEEME GCLTLSWHGR SIMSSSAWRC GGDVVAPPPA DDVCVNRWSG  360
GMSGESSGTD GRVGGIGSER GANL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-58	3	338	26	378	Protein SCARECROW
5b3h_A	1e-58	3	338	25	377	Protein SCARECROW
5b3h_D	1e-58	3	338	25	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Transcription coactivator of the zinc finger transcription factors GAF1/IDD2 and ENY/IDD1 in regulation of gibberellin homeostasis and signaling (PubMed:25035403). No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Positively regulates XERICO expression. In contrast to RGA, it is less sensitive to GA. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269\|PubMed:11487693, ECO:0000269\|PubMed:11606551, ECO:0000269\|PubMed:11606552, ECO:0000269\|PubMed:14973286, ECO:0000269\|PubMed:15128937, ECO:0000269\|PubMed:16034591, ECO:0000269\|PubMed:17933900, ECO:0000269\|PubMed:25035403, ECO:0000269\|PubMed:9389651}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020578006.1	0.0	DELLA protein RHT-1-like
Swissprot	Q9LQT8	1e-119	GAI_ARATH; DELLA protein GAI
TrEMBL	A0A2I0WBC8	0.0	A0A2I0WBC8_9ASPA; DELLA protein GAI
STRING	XP_008777332.1	1e-158	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP998	38	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-112	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gallego-Giraldo C, et al. Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis. Plant J., 2014. 79(6): p. 1020-1032 [PMID:24961590] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Marín-de la Rosa N, et al. Genome Wide Binding Site Analysis Reveals Transcriptional Coactivation of Cytokinin-Responsive Genes by DELLA Proteins. PLoS Genet., 2015. 11(7): p. e1005337 [PMID:26134422] Shi H,Wei Y,Wang Q,Reiter RJ,He C Melatonin mediates the stabilization of DELLA proteins to repress the floral transition in Arabidopsis. J. Pineal Res., 2016. 60(3): p. 373-9 [PMID:26887824] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Qu J,Kang SG,Hah C,Jang JC Molecular and cellular characterization of GA-Stimulated Transcripts GASA4 and GASA6 in Arabidopsis thaliana. Plant Sci., 2016. 246: p. 1-10 [PMID:26993231] Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Wang H, et al. The DELLA-CONSTANS Transcription Factor Cascade Integrates Gibberellic Acid and Photoperiod Signaling to Regulate Flowering. Plant Physiol., 2016. 172(1): p. 479-88 [PMID:27406167] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Liu B,De Storme N,Geelen D Gibberellin Induces Diploid Pollen Formation by Interfering with Meiotic Cytokinesis. Plant Physiol., 2017. 173(1): p. 338-353 [PMID:27621423] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917] Zentella R, et al. The Arabidopsis O-fucosyltransferase SPINDLY activates nuclear growth repressor DELLA. Nat. Chem. Biol., 2017. 13(5): p. 479-485 [PMID:28244988] Zhang Y, et al. GA-DELLA pathway is involved in regulation of nitrogen deficiency-induced anthocyanin accumulation. Plant Cell Rep., 2017. 36(4): p. 557-569 [PMID:28275852] Zhang L,Chen L,Yu D Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering. Plant Physiol., 2018. 176(1): p. 790-803 [PMID:29133369] Nelson SK,Ariizumi T,Steber CM Biology in the Dry Seed: Transcriptome Changes Associated with Dry Seed Dormancy and Dormancy Loss in the Arabidopsis GA-Insensitive sleepy1-2 Mutant. Front Plant Sci, 2017. 8: p. 2158 [PMID:29312402] Liu B,De Storme N,Geelen D Cold-Induced Male Meiotic Restitution in Arabidopsis thaliana Is Not Mediated by GA-DELLA Signaling. Front Plant Sci, 2018. 9: p. 91 [PMID:29459879] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486] Felipo-Benavent A, et al. Regulation of xylem fiber differentiation by gibberellins through DELLA-KNAT1 interaction. Development, 2019. [PMID:30389856] Wright DA, et al. Recovery of YAC-end sequences through complementation of an Escherichia coli pyrF mutation. Nucleic Acids Res., 1997. 25(13): p. 2679-80 [PMID:9185581]