PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_17157 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | AP2 | ||||||||
Protein Properties | Length: 115aa MW: 13175.8 Da PI: 9.6746 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.5 | 2.8e-07 | 3 | 31 | 28 | 55 |
AP2 28 r.krfslgkfgtaeeAakaaiaarkkleg 55 + k+++lg f+ta +Aa+a+++a+ k++g PEQU_17157 3 CgKQVYLGGFDTAHDAARAYDRAAVKFRG 31 44***********************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.812 | 1 | 39 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.5E-11 | 1 | 45 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-10 | 4 | 40 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-12 | 4 | 40 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
RDCGKQVYLG GFDTAHDAAR AYDRAAVKFR GLDADINFSL SDYEEDLKQM RNLTKEEFVH 60 VLRRQSSGLS RGSSKYSGVT RHKFGRWEAR VGQLLGQKYE IFPNIFITSY FGNLT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ119837 | 1e-89 | DQ119837.1 Dendrobium crumenatum APETALA2-like protein (AP2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020574422.1 | 1e-63 | LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor TOE3 | ||||
Swissprot | Q8H443 | 2e-47 | AP23_ORYSJ; APETALA2-like protein 3 | ||||
TrEMBL | M0TSA6 | 2e-54 | M0TSA6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P21030_001 | 3e-55 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 4e-34 | related to AP2.7 |
Publications ? help Back to Top | |||
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