PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_16990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 172aa MW: 19092.7 Da PI: 7.3905 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28.8 | 3e-09 | 24 | 68 | 2 | 50 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 +kGVr++ + rWv+e+r+p +k++r++lg+ +e+ a aaia r PEQU_16990 24 IFKGVRQRN-SDRWVCEVREP---NKKTRIWLGTIPPHEMRAGAAIALR 68 59****999.7******9998...347*******999999999999865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.2E-5 | 23 | 53 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.74E-19 | 23 | 79 | No hit | No description |
SuperFamily | SSF54171 | 3.01E-10 | 24 | 78 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-18 | 24 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-13 | 24 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.286 | 24 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 172 aa Download sequence Send to blast |
MTVSSAPPKR RAGRTKFRET RHPIFKGVRQ RNSDRWVCEV REPNKKTRIW LGTIPPHEMR 60 AGAAIALRGR SACLNFADSP ARLPIPESSS PRDIQRAAVA AAEAFRPGRM EAESSSSAAA 120 EMRVDDPFCM ELGMVDYYLD MAEGMLIDPP PMPSEEEGDG SNCDVSLWSH SF |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020589777.1 | 1e-124 | dehydration-responsive element-binding protein 1G-like | ||||
Swissprot | A2XWL6 | 1e-52 | DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E | ||||
Swissprot | Q8H273 | 1e-52 | DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E | ||||
TrEMBL | A0A455LAF7 | 2e-83 | A0A455LAF7_9ASPA; Dehydration-responsive element-binding DREB-like protein (Fragment) | ||||
STRING | XP_008803257.1 | 1e-67 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51990.1 | 2e-48 | C-repeat-binding factor 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|