PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_15427 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 103aa MW: 12174.5 Da PI: 11.0005 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.2 | 2.9e-30 | 22 | 71 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k ienk+nrqvtfskRrng++KKA+ELSvLC+aeva+iifss+gkl+e+ PEQU_15427 22 KLIENKINRQVTFSKRRNGLMKKAFELSVLCEAEVALIIFSSRGKLFEFG 71 569*********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.015 | 14 | 74 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-39 | 14 | 73 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.60E-35 | 15 | 73 | No hit | No description |
SuperFamily | SSF55455 | 7.06E-30 | 15 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-31 | 16 | 36 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 16 | 70 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.5E-26 | 24 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-31 | 36 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-31 | 51 | 72 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
SQQKKKKKKK KKKMGRGRVE LKLIENKINR QVTFSKRRNG LMKKAFELSV LCEAEVALII 60 FSSRGKLFEF GSPEYSLSLS LSVFFFKKLF LKAYYEFSIK NYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-19 | 14 | 74 | 1 | 61 | MEF2C |
5f28_B | 1e-19 | 14 | 74 | 1 | 61 | MEF2C |
5f28_C | 1e-19 | 14 | 74 | 1 | 61 | MEF2C |
5f28_D | 1e-19 | 14 | 74 | 1 | 61 | MEF2C |
6byy_A | 1e-19 | 14 | 74 | 1 | 61 | MEF2 CHIMERA |
6byy_B | 1e-19 | 14 | 74 | 1 | 61 | MEF2 CHIMERA |
6byy_C | 1e-19 | 14 | 74 | 1 | 61 | MEF2 CHIMERA |
6byy_D | 1e-19 | 14 | 74 | 1 | 61 | MEF2 CHIMERA |
6bz1_A | 2e-19 | 14 | 74 | 1 | 61 | MEF2 CHIMERA |
6bz1_B | 2e-19 | 14 | 74 | 1 | 61 | MEF2 CHIMERA |
6bz1_C | 2e-19 | 14 | 74 | 1 | 61 | MEF2 CHIMERA |
6bz1_D | 2e-19 | 14 | 74 | 1 | 61 | MEF2 CHIMERA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 12 | KKKKKKKKKK |
2 | 4 | 12 | KKKKKKKKK |
3 | 6 | 12 | KKKKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time. {ECO:0000269|PubMed:19820190, ECO:0000269|Ref.8}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020579300.1 | 1e-35 | MADS-box transcription factor 6-like | ||||
Swissprot | Q6EU39 | 5e-32 | MADS6_ORYSJ; MADS-box transcription factor 6 | ||||
TrEMBL | A0A2I0WIQ1 | 2e-39 | A0A2I0WIQ1_9ASPA; MADS-box transcription factor 6 | ||||
STRING | ORGLA02G0240800.1 | 4e-32 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 6e-33 | AGAMOUS-like 6 |