PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_15396 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 237aa MW: 25127 Da PI: 7.4218 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.1 | 1.6e-27 | 39 | 91 | 8 | 59 |
EEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 8 rKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 rKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY++eHnh+ PEQU_15396 39 RKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTMFIVTYTSEHNHP 91 9********************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 29.356 | 39 | 93 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.89E-23 | 39 | 93 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.4E-27 | 39 | 93 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-30 | 39 | 92 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-23 | 39 | 91 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
SRRSVQKRVV SLPVPEFEGV PRLKTGGGGG GGGARPGGRK YGQKPIKGSP YPRGYYRCSS 60 SKGCPARKQV ERSRADPTMF IVTYTSEHNH PWPPVHKKTK TAEDPKPVET SPAEPASDPE 120 EIFSDLIGEE PSMLIHDHFR WPSNSSAAAD DDGGPLYGPP VSGRSDECDK LGGRGSVAAV 180 DEEEDALFAG LGELPEYSVI FRRGYVDRQV CGGEEGKRCG LKATAAAPAA AACGSTG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-16 | 39 | 93 | 23 | 79 | Disease resistance protein RRS1 |
5w3x_D | 1e-16 | 39 | 93 | 23 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020575074.1 | 1e-142 | probable WRKY transcription factor 65 | ||||
Swissprot | Q9LP56 | 2e-41 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | A0A2R4LUZ4 | 1e-128 | A0A2R4LUZ4_CYMEN; Putative WRKY transcription factor 65 | ||||
STRING | XP_008792327.1 | 2e-56 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10947 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 1e-38 | WRKY DNA-binding protein 65 |
Publications ? help Back to Top | |||
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