PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_15028

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

bHLH

Protein Properties

Length: 347aa MW: 38714.1 Da PI: 8.2916

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_15028	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.8	8.3e-13	274	319	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq PEQU_15028 274 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 319 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.25	268	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.37E-16	271	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.09E-12	272	323	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.3E-15	273	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.1E-10	274	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.8E-14	274	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MYGSPSAVAT KDFNIPLSRR KEESDHQRQQ QMSSGMLRYR SAPSSLLGEV CENLLHVRPS 60 SPETESIFAR FLSSDLRDEK TAAGERNPHF KLSPETEQNS GFPCAPSQML YHSQQQQSVT 120 DGANPIRQSS SPAGFFSHLN VDNGYGLMRG MTAGMKGQIN FSSRQNSLSQ ISEMGNDGVS 180 GDDRSPVESH NGRCFIPGYP VSSWEDTLLS DNISGFKRSR DDQDIKNHQV SGLTHHFSLP 240 KTSSEMAAIE FLQFQDSVPC KIRAKRGCAT HPRSIAERVR RTRISERMRK LQELVPNMDK 300 QTNTADMLDL AVDYIKDLQR QVKTVTDSRA ACTCSASQQK PYQNPTS

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MYGSPSAVAT KDFNIPLSRR KEESDHQRQQ QMSSGMLRYR SAPSSLLGEV CENLLHVRPS  60
SPETESIFAR FLSSDLRDEK TAAGERNPHF KLSPETEQNS GFPCAPSQML YHSQQQQSVT  120
DGANPIRQSS SPAGFFSHLN VDNGYGLMRG MTAGMKGQIN FSSRQNSLSQ ISEMGNDGVS  180
GDDRSPVESH NGRCFIPGYP VSSWEDTLLS DNISGFKRSR DDQDIKNHQV SGLTHHFSLP  240
KTSSEMAAIE FLQFQDSVPC KIRAKRGCAT HPRSIAERVR RTRISERMRK LQELVPNMDK  300
QTNTADMLDL AVDYIKDLQR QVKTVTDSRA ACTCSASQQK PYQNPTS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00646	PBM	Transfer from LOC_Os08g39630	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020592852.1	0.0	transcription factor bHLH130-like
TrEMBL	A0A2I0VYP8	0.0	A0A2I0VYP8_9ASPA; Transcription factor bHLH130
STRING	XP_008776552.1	1e-134	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1884	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-65	bHLH family protein