PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_14701 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | B3 | ||||||||
Protein Properties | Length: 185aa MW: 21348.2 Da PI: 4.516 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.9 | 5.8e-16 | 11 | 73 | 33 | 99 |
-SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +tle +sg++W v++ + +++++l +GWkeFv+an ++egD + F++ g+s+f v +f+ PEQU_14701 11 AEVITLEGPSGNQWPVRF--SYIGDHIYLNEGWKEFVEANYVEEGDCLAFEYCGSSCF--SVLIFDP 73 4469**************..777788****************************9***..9999885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 14.424 | 1 | 74 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.46E-17 | 2 | 72 | No hit | No description |
SuperFamily | SSF101936 | 1.29E-20 | 5 | 76 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-19 | 6 | 76 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.4E-4 | 7 | 74 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-13 | 11 | 72 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MNFMMNFEQL AEVITLEGPS GNQWPVRFSY IGDHIYLNEG WKEFVEANYV EEGDCLAFEY 60 CGSSCFSVLI FDPSGCEREA SYFARIMNPI PAKGCQAEEK RDNQVPDVPR FSSPRLPCVD 120 NSPMQLVSNY EKSSAFNVKF DGRRFGMRSS APNDENNYGD LFHNLLLIKR PFGIFFVFVF 180 YFCFF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020586230.1 | 1e-116 | B3 domain-containing protein Os03g0622100-like isoform X1 | ||||
Refseq | XP_020586232.1 | 1e-116 | B3 domain-containing protein Os03g0622100-like isoform X1 | ||||
Refseq | XP_020586233.1 | 1e-116 | B3 domain-containing protein Os03g0622100-like isoform X1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 8e-19 | B3 family protein |