PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_14552
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HSF
Protein Properties Length: 313aa    MW: 34595.7 Da    PI: 5.3104
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_14552genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.29.8e-37301222103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+e++++isw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++sFk+g+k++l++i+
    PEQU_14552  30 FLTKTYQLVDDPEFNDVISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDSFKRGEKRQLNEIH 117
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k +
    PEQU_14552 118 RRKIS 122
                   *9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-3722113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-5526119IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.99E-3427119IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.1E-203053IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.0E-3230119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-206880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-208193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAAPQSTGES SAKSTASVTP EAQRSIPTPF LTKTYQLVDD PEFNDVISWN EDGSTFIVWR  60
PAEFARDLLP KYFKHNNFSS FVRQLNTYGF RKIVPDRWEF ANDSFKRGEK RQLNEIHRRK  120
ISQPAGTPTQ PSAIPAQPVA MVSPANNILS PVNSADEQVI SSNSSQGAIE ACSSEVELRE  180
ENERLRRENA RLSHELGQMK TLCNKILQLM SKYDFGYQID GGGAARCGGG RPEAEGSPDL  240
EIFPATPSVK NEADVLPRLF GVAIGSKRGR DEEVEEVRKS VVDVKTEPLD LGADRTVEVS  300
GLGNWRLGWS IGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-233011929129Heat shock factor protein 1
5d5v_B4e-233011929129Heat shock factor protein 1
5d5v_D4e-233011929129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020584004.10.0heat stress transcription factor B-2c-like
SwissprotQ652B09e-86HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLA0A2I0VK571e-146A0A2I0VK57_9ASPA; Heat stress transcription factor B-2c
STRINGXP_008790507.11e-106(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.14e-69heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rerksiri W,Zhang X,Xiong H,Chen X
    Expression and promoter analysis of six heat stress-inducible genes in rice.
    ScientificWorldJournal, 2013. 2013: p. 397401
    [PMID:24459431]