PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_13832 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 874aa MW: 96187.8 Da PI: 5.2263 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35 | 3.3e-11 | 2 | 33 | 16 | 48 |
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 vk++G++ W+tI++ ++ gR +kqc++rw+++l PEQU_13832 2 VKKHGPKKWSTISQALP-GRIGKQCRERWHNHL 33 9****************.*************97 PP | |||||||
2 | Myb_DNA-binding | 48.6 | 1.9e-15 | 39 | 81 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ l++a++ +G++ W+ + ++ gR+++++k++w+ PEQU_13832 39 KDAWTQEEEMALIQAHQIYGNK-WAELTKFLP-GRSDNSIKNHWN 81 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 6.67E-9 | 1 | 33 | No hit | No description |
SMART | SM00717 | 0.093 | 1 | 35 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 23.42 | 1 | 37 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-19 | 1 | 40 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.5E-9 | 2 | 33 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.18E-28 | 13 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-15 | 38 | 86 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.602 | 38 | 88 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.1E-13 | 39 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-21 | 41 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.51E-12 | 41 | 81 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 874 aa Download sequence Send to blast |
MVKKHGPKKW STISQALPGR IGKQCRERWH NHLNPTINKD AWTQEEEMAL IQAHQIYGNK 60 WAELTKFLPG RSDNSIKNHW NSSVKKKLES YMVQGLIGRY PGLTNVNSST SRIRKKNHDG 120 GLKERPDMED SSECSSSALV ASSQSECEMA KPVVGEDAIK EEAMDSHLPV CSSEYYGSVE 180 KMICDDVPSE VHSTGNLLPK DEGSATEIKK PSETDSNDND HENKDILFHK PTPLETSTSG 240 AGSGFENKDK TWISLHNGCS SNLFDSVTTL GMENLDCAAA LSYKSAIHRS GTSMNFVPFS 300 YPIFPVNTSH VYGIPCFQNL TTVPPSFICP SASVEIQDTS WRLQNSGAVA GLFIGVPKSG 360 CPAALVPEAS SLIHETIDQQ LESVVQEQEK LSIEETLTAT DCCDNVSRNL SLINEEKVEQ 420 ENVLEPGTVS PAEKMKEIQS ENFLDSGSLF YEPPRIQSLE FPFVCCDIVS SDLQQAYSPL 480 GIRQLMMSSA SCNLWDSPSR DDSPDGILKH AAKSFICTPS IMKKRQRELL SPLQERRSDK 540 KYGTDMNRGS FFVPLMKGDE AYIEDMIGEV DPENVYLSLV DDVRDSSSDL KDKHVTITKQ 600 NENLGAKLTQ KSTCSKSSRA SKLKQNVEDW RYGTKVPSDV DSDAKEAQCN AVLAERISSN 660 LESLSACSTF ISPGACGTKH AECSVTLTSL QYPPSSKKPQ IAVEKFAPSI DADHEIFNIF 720 ADTPGIKKGL DSPSSWKSPL FLNSFLAGAD FTCEDFRYFM SPGERSYDAL GLMKQLSEKN 780 AGVIAEAQEV LSNGGQKLNF DNVKSNNSSR ENEDSAKEQE NLIPMPSNIV AEGRVLDFTG 840 CNTPLEKTKS LKTKHVSSPS ISSPTTSHLL RGCR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 4e-38 | 1 | 88 | 18 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-38 | 1 | 88 | 18 | 105 | C-Myb DNA-Binding Domain |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020574976.1 | 0.0 | transcription factor MYB3R-4-like isoform X1 | ||||
TrEMBL | A0A455LA95 | 0.0 | A0A455LA95_9ASPA; Transcription factor MYB3R-4-like protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 1e-50 | myb domain protein 3r-4 |