PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_13623 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | LBD | ||||||||
Protein Properties | Length: 238aa MW: 26129.3 Da PI: 7.5329 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.1 | 2.6e-42 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkCa++C++apyfp e+++kf nvh++FGasn+ kll++l++++reda++sl yeAear++dPvyG+vg i+ lq++l ql+ +l+++k+ PEQU_13623 7 PCAACKFLRRKCAQGCIFAPYFPPENQSKFSNVHRVFGASNIAKLLADLSPDQREDAVNSLSYEAEARINDPVYGCVGYISLLQHRLVQLQRDLSAAKR 105 7**********************************************************************************************9987 PP DUF260 100 e 100 e PEQU_13623 106 E 106 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.993 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.1E-42 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009954 | Biological Process | proximal/distal pattern formation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0048441 | Biological Process | petal development |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MSSSSSPCAA CKFLRRKCAQ GCIFAPYFPP ENQSKFSNVH RVFGASNIAK LLADLSPDQR 60 EDAVNSLSYE AEARINDPVY GCVGYISLLQ HRLVQLQRDL SAAKRELSNY INHAAVGGPN 120 NQFYATPPSM YRDQNQQMQR MEAEQFAEVI AAATEHEMLR NIEQQHVMAR FMGVGNVVDS 180 SSCQPLELVS PHIGGFQGSL AVLQQKHGGQ VQEGSGAQVR HVRRSFDDGR NGVGPSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-49 | 4 | 110 | 8 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-49 | 4 | 110 | 8 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020579153.1 | 1e-177 | LOB domain-containing protein 25-like | ||||
Refseq | XP_020579154.1 | 1e-177 | LOB domain-containing protein 25-like | ||||
TrEMBL | A0A2I0WZA4 | 2e-88 | A0A2I0WZA4_9ASPA; LOB domain-containing protein 6 | ||||
STRING | GSMUA_Achr6P04670_001 | 6e-60 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6143 | 34 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 4e-55 | ASYMMETRIC LEAVES 2-like 1 |