PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_12328
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MIKC_MADS
Protein Properties Length: 140aa    MW: 16079.5 Da    PI: 9.749
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_12328genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.81.7e-24958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                kri++ +nrqvtfskRr g+lKKA+EL vL+da+v v+ifs +g+ly y 
  PEQU_12328  9 KRIDSITNRQVTFSKRRGGLLKKAHELAVLTDARVGVMIFSASGRLYQYN 58
                79**********************************************96 PP
2K-box547.1e-19831401269
       K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                 + ++ lq elak+k+ ++ Lq ++R++ GedL+ L++++L+ Le+qL+ s++kiR++K
  PEQU_12328  83 NSHQLLQFELAKIKQDTHVLQASIRQFTGEDLTGLTINDLNLLEEQLDYSVSKIRTRK 140
                 568999***************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.857161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-29286IPR002100Transcription factor, MADS-box
CDDcd002656.33E-37279No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-26323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-263859IPR002100Transcription factor, MADS-box
PfamPF014862.8E-1583140IPR002487Transcription factor, K-box
PROSITE profilePS5129711.08885140IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MGRGKIEIKR IDSITNRQVT FSKRRGGLLK KAHELAVLTD ARVGVMIFSA SGRLYQYNSP  60
GESMERIIED YLKVHHIQLE DLNSHQLLQF ELAKIKQDTH VLQASIRQFT GEDLTGLTIN  120
DLNLLEEQLD YSVSKIRTRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-18171169Myocyte-specific enhancer factor 2B
1tqe_Q9e-18171169Myocyte-specific enhancer factor 2B
1tqe_R9e-18171169Myocyte-specific enhancer factor 2B
1tqe_S9e-18171169Myocyte-specific enhancer factor 2B
6c9l_A9e-18171169Myocyte-specific enhancer factor 2B
6c9l_B9e-18171169Myocyte-specific enhancer factor 2B
6c9l_C9e-18171169Myocyte-specific enhancer factor 2B
6c9l_D9e-18171169Myocyte-specific enhancer factor 2B
6c9l_E9e-18171169Myocyte-specific enhancer factor 2B
6c9l_F9e-18171169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020586349.15e-97MADS-box protein ZMM17-like
SwissprotQ8VWM83e-51M17_MAIZE; MADS-box protein ZMM17
TrEMBLA0A455LA466e-66A0A455LA46_9ASPA; MADS-box protein-like protein (Fragment)
STRINGGSMUA_Achr3P23580_0013e-55(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-40AGAMOUS-like 21