PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_12064 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 319aa MW: 34534.8 Da PI: 6.2595 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.9 | 2.1e-09 | 166 | 210 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ K + a++L + v+Y+k L PEQU_12064 166 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEIVDYVKFL 210 99***********************7.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.22E-15 | 159 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.221 | 161 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.8E-15 | 163 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.75E-11 | 165 | 215 | No hit | No description |
Pfam | PF00010 | 9.3E-7 | 166 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-10 | 167 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MANPPQPPPD GIADDFFEQI FSMPGYTSGD ASLAGGDGSS VPGMVQQFNS GDVSSPRNFS 60 VFPLGLSLEQ GRTGFAVAEE GSCSGVVGKR LREGLEAKTS SDAERDPIQL PSLFPPFGQV 120 QSHQIRHNSP QILHGQALQA QVASASQVPA PRPRVRARRG QATDPHSIAE RLRRERIAER 180 MRALQELVPN TNKTDRAAML DEIVDYVKFL RLQVKVLSMS RLGGAGAVAQ LVADIPLSQT 240 EGDSSSDGRS KQQIWEKWST DGTERQVAKL MEEDVGAAMQ FLQSKALCMM PISLAAAIYH 300 TQHQPENPSV KNEPNTPPS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 175 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020580085.1 | 0.0 | transcription factor UNE12 | ||||
Swissprot | O22768 | 2e-86 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A2I0WHB1 | 0.0 | A0A2I0WHB1_9ASPA; Transcription factor UNE12 | ||||
STRING | XP_010246319.1 | 1e-130 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2656 | 35 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.2 | 2e-63 | bHLH family protein |
Publications ? help Back to Top | |||
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