PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_11259 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 245aa MW: 26882.7 Da PI: 7.0871 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.4 | 4.5e-12 | 60 | 105 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ K +Ka++L + ++Y+k Lq PEQU_11259 60 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIDYVKFLQ 105 99***********************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.07E-11 | 53 | 109 | No hit | No description |
SuperFamily | SSF47459 | 2.36E-17 | 53 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.263 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.7E-17 | 57 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-9 | 60 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-13 | 61 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MTCILDICFC LLQSEVANLK HLLGHSSNSH QPITQTNAIV CNVAAKPRVR ARRGQATDPH 60 SIAERLRREK IAERMKNLQE LVPNSNKTDK ASMLDEIIDY VKFLQLQVKV LSMSRLGAAG 120 AVVPLITDAQ AEDTGSLHLS PISQGADTLE SQDSLAFEQE VVKLMESSVT TAMQYLQNKG 180 LCLMPIALAT AISNPKGSAA SNPSDRRKQD LSERNDHLDE LNRCSGLSAK QEEFTQSMSN 240 GRLLQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00659 | PBM | Transfer from Pp3c14_15890 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020582483.1 | 1e-170 | transcription factor bHLH66-like | ||||
Swissprot | Q9LSQ3 | 1e-64 | BH082_ARATH; Transcription factor bHLH82 | ||||
TrEMBL | A0A2H3XIR6 | 2e-90 | A0A2H3XIR6_PHODC; uncharacterized protein LOC103703328 | ||||
TrEMBL | A0A2H3YEK7 | 7e-91 | A0A2H3YEK7_PHODC; transcription factor bHLH10-like | ||||
STRING | XP_008784365.1 | 3e-91 | (Phoenix dactylifera) | ||||
STRING | XP_008797366.1 | 1e-91 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3254 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58010.1 | 4e-67 | LJRHL1-like 3 |
Publications ? help Back to Top | |||
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