PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_10804
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 336aa    MW: 36727.1 Da    PI: 4.9686
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_10804genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-19147197256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+WvAeIr p++   r r +lg+f+tae+Aa a+++ + +l+ge
  PEQU_10804 147 LYRGVRQRH-WGKWVAEIRLPKN---RNRLWLGTFDTAEDAALAYDREAFRLRGE 197
                 59******9.**********976...48*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.77E-33146204No hitNo description
SMARTSM003803.8E-38147210IPR001471AP2/ERF domain
PROSITE profilePS5103222.827147204IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-22147205IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.4E-32147204IPR001471AP2/ERF domain
PRINTSPR003671.2E-10148159IPR001471AP2/ERF domain
PfamPF008474.7E-12148197IPR001471AP2/ERF domain
PRINTSPR003671.2E-10170186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEFESPSVPI FEEAHPEALQ PLKKFRSPAR FLSNPPSPST PAGPTASSPL SIFPFAYEAS  60
NPSSLASSLL PLSQQKMISF SQNKYGSTPP PSSLFLTEGI QQRYTEPLLK YWSESLNLSP  120
RGNMMMTSLL EGKSSSPASL LRPPVKLYRG VRQRHWGKWV AEIRLPKNRN RLWLGTFDTA  180
EDAALAYDRE AFRLRGENAR LNFPSLFLGK SSKDVASCSS SPSSSTPQKK KVEVLDSSEQ  240
SSEVAAMEQS SFGTELVWSE AEEAWFNAWG PGSSVWDDVD GAGGSMLFQS PLGSVSEAET  300
GCSAPQLPAA TAEEEMENSS SAPHSFPPST FMWKDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21146204160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in abiotic stress tolerance. Can directly regulate stress-related gene expression by binding to the DNA sequence 5'-[AG]CCGAC-3' (DRE element) of their promoter region. Involved in the regulation of stomatal closure movement under drought stress (PubMed:23625358). Acts as a positive regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress (PubMed:18550687, PubMed:22095047, PubMed:23625358). Induced by salt stress (PubMed:22095047). Induced by abscisic acid (ABA) and heat stress (PubMed:23625358). {ECO:0000269|PubMed:18550687, ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020581749.10.0ethylene-responsive transcription factor ERF054-like
SwissprotQ9SKT14e-49ERF53_ARATH; Ethylene-responsive transcription factor ERF053
TrEMBLA0A2I0VN051e-165A0A2I0VN05_9ASPA; Ethylene-responsive transcription factor ERF053
STRINGGSMUA_Achr4P26080_0014e-80(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cheng MC,Hsieh EJ,Chen JH,Chen HY,Lin TP
    CORRECTION. Arabidopsis RGLG2, Functioning as a RING E3 Ligase, Interacts with AtERF53 and Negatively Regulates the Plant Drought Stress Response.
    Plant Physiol., 2016. 170(2): p. 1162-3
    [PMID:26826724]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]