PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_10411
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 70aa    MW: 8034.07 Da    PI: 11.3635
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_10411genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP272.95.2e-231263156
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                ++y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a+++a+++++g+
  PEQU_10411 12 PRYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEAAARAYDEAALRFRGN 63
                68********.**********64....55*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.0E-24170IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000187.12E-191270No hitNo description
PfamPF008472.1E-161262IPR001471AP2/ERF domain
SMARTSM003805.4E-321370IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-241370IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.3E-341370IPR001471AP2/ERF domain
PROSITE profilePS5103225.7391370IPR001471AP2/ERF domain
PRINTSPR003679.3E-131425IPR001471AP2/ERF domain
PRINTSPR003679.3E-133652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
SPHPDAQTEI RPRYRGVRQR PWGKWAAEIR DPVKAARVWL GTFDTAEAAA RAYDEAALRF  60
RGNRAKLNFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-241470663ATERF1
3gcc_A1e-241470663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020573703.11e-44ethylene-responsive transcription factor ERF098-like, partial
SwissprotQ9FH544e-30EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A2I0W4W19e-38A0A2I0W4W1_9ASPA; Ethylene-responsive transcription factor ERF114
STRINGXP_010096464.11e-33(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-19ethylene response factor 110
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]