PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_10347 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 222aa MW: 25548 Da PI: 8.2294 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.3 | 9.5e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdae+ +iifss+gklye+ss PEQU_10347 10 RIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEIGLIIFSSSGKLYEFSS 59 8***********************************************96 PP | |||||||
2 | K-box | 74.6 | 2.8e-25 | 78 | 171 | 5 | 98 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++ +e++ + ++++++ + ++ie L ++R+l+Ge+Les+s++eL++Le+qLe++l++++ +Kn++l+eqi +l+++e+elqee+ L+k+ PEQU_10347 78 ENSRSTEQNIQPSKKDAEDMARKIELLNVSKRKLMGESLESCSVEELHELESQLEQGLTRVKRRKNHVLKEQITQLKERERELQEEHDLLQKQA 171 45668999********************************************************************************999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.721 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.9E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.92E-42 | 3 | 72 | No hit | No description |
PRINTS | PR00404 | 2.5E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.79E-32 | 3 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.5E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.9E-23 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.947 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000060 | Biological Process | protein import into nucleus, translocation | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MVRGKTELRR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEIGLIIFSS SGKLYEFSSS 60 SMSNTIERYK KHVKDVIENS RSTEQNIQPS KKDAEDMARK IELLNVSKRK LMGESLESCS 120 VEELHELESQ LEQGLTRVKR RKNHVLKEQI TQLKEREREL QEEHDLLQKQ ADFLASSLRK 180 PEVAVEALQE VVPEGDNQHK DVETELYIGW PAGGSTQQLL KR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-19 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6byy_B | 1e-19 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6byy_C | 1e-19 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6byy_D | 1e-19 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6bz1_A | 1e-19 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6bz1_B | 1e-19 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6bz1_C | 1e-19 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6bz1_D | 1e-19 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00076 | ChIP-chip | Transfer from AT2G45660 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020573715.1 | 1e-160 | MADS-box protein SOC1-like | ||||
Swissprot | Q9XJ60 | 2e-67 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | A0A286JU19 | 1e-154 | A0A286JU19_PHAAO; Suppressor of overexpression of constans1-like protein | ||||
STRING | XP_008783455.1 | 6e-79 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1413 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 2e-55 | AGAMOUS-like 20 |