PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_10341

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

Trihelix

Protein Properties

Length: 718aa MW: 78630.7 Da PI: 5.0535

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_10341	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.8	1.6e-29	99	183	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe laL+++r++m+ +r++ lk+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s +++f+qlea PEQU_10341 99 RWPRQEALALLKIRSDMDAVFRDATLKGPLWEDVSRKLAELGYSRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFTQLEA 183 8*******************************************************************866665..*****85 PP
2	trihelix	101	9.7e-32	447	532	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e+r+ ++ k+plWee+s m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a PEQU_10341 447 RWPKMEVLALIKLRSGLESRYLESGPKGPLWEEISLGMKRLGYNRNSKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 532 8*******************************************************************8.99999******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.2	96	158	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.574	98	156	IPR017877	Myb-like domain
CDD	cd12203	6.49E-26	98	163	No hit	No description
Pfam	PF13837	2.0E-19	98	184	No hit	No description
PROSITE profile	PS50090	7.108	440	504	IPR017877	Myb-like domain
SMART	SM00717	0.054	444	506	IPR001005	SANT/Myb domain
Pfam	PF13837	6.9E-21	446	533	No hit	No description
CDD	cd12203	3.15E-28	447	511	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 718 aa Download sequence Send to blast
MQQQGGSQYG VPPPEMVPPF TSPMIGIPTG VEYLQQSSQQ VAEDASPINS RPAPPQPRQQ 60 VTIFEEYGSG GGAMVRNFAD EEALGAGEES ERGGGGGNRW PRQEALALLK IRSDMDAVFR 120 DATLKGPLWE DVSRKLAELG YSRSAKKCKE KFENVHKYYK RTKEGRAGRQ DGKSYRFFTQ 180 LEALHGSTGG TTTMTPPPPV TRSQPPPVAA PAPPSMPLLE ISTPAAVVGI SFSSNTSSSS 240 ASESDGENTE EGGLGALHDG GRKRKREEWP GGSRKMIAFF DGLMKQVMER QEAMQQRFLE 300 TIEKREQDRM IREEAWKRQE MARLNREYEL MAQERTMAAN RDAAIISFLQ KFTGIQPPIS 360 AATPPEESAP PPPTSPVEQP KPALAPAVQA PAMQNEASDN LPIERNDLLL NQATSSSEPA 420 AAMSEMADGM GVGSSLDAIS PSSSSSRWPK MEVLALIKLR SGLESRYLES GPKGPLWEEI 480 SLGMKRLGYN RNSKRCKEKW ENINKYFKKV KESNKKRPED AKTCPYFHEL DALYRKKQLF 540 GGAAAVPSGI AAQQQQELAI NQKIGESLQT QVQLSVLPEK ESNKVQKTPN TLRNSDGGNH 600 ESSGIQIARS NGTPEDIVRE LMGQQNLPHR VANEFDKLGG GETVDSDTIN HEYEDEDEDN 660 EDEDEDDDEE DGKLRYEIQF QRQAVGAGAA SARSGNSTGK VPTTSAAPSA GSFLAMVQ

Sequence ? help Back to Top

Protein Sequence Length: 718 aa Download sequence Send to blast

MQQQGGSQYG VPPPEMVPPF TSPMIGIPTG VEYLQQSSQQ VAEDASPINS RPAPPQPRQQ  60
VTIFEEYGSG GGAMVRNFAD EEALGAGEES ERGGGGGNRW PRQEALALLK IRSDMDAVFR  120
DATLKGPLWE DVSRKLAELG YSRSAKKCKE KFENVHKYYK RTKEGRAGRQ DGKSYRFFTQ  180
LEALHGSTGG TTTMTPPPPV TRSQPPPVAA PAPPSMPLLE ISTPAAVVGI SFSSNTSSSS  240
ASESDGENTE EGGLGALHDG GRKRKREEWP GGSRKMIAFF DGLMKQVMER QEAMQQRFLE  300
TIEKREQDRM IREEAWKRQE MARLNREYEL MAQERTMAAN RDAAIISFLQ KFTGIQPPIS  360
AATPPEESAP PPPTSPVEQP KPALAPAVQA PAMQNEASDN LPIERNDLLL NQATSSSEPA  420
AAMSEMADGM GVGSSLDAIS PSSSSSRWPK MEVLALIKLR SGLESRYLES GPKGPLWEEI  480
SLGMKRLGYN RNSKRCKEKW ENINKYFKKV KESNKKRPED AKTCPYFHEL DALYRKKQLF  540
GGAAAVPSGI AAQQQQELAI NQKIGESLQT QVQLSVLPEK ESNKVQKTPN TLRNSDGGNH  600
ESSGIQIARS NGTPEDIVRE LMGQQNLPHR VANEFDKLGG GETVDSDTIN HEYEDEDEDN  660
EDEDEDDDEE DGKLRYEIQF QRQAVGAGAA SARSGNSTGK VPTTSAAPSA GSFLAMVQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC217202	6e-31	AC217202.1 Oryza punctata clone OP__Ba0068C08, complete sequence.
GenBank	AC226072	6e-31	AC226072.1 Oryza minuta clone OM__Ba0051J08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020573577.1	0.0	trihelix transcription factor GTL1-like
Refseq	XP_020573578.1	0.0	trihelix transcription factor GTL1-like
TrEMBL	A0A2I0VPE7	0.0	A0A2I0VPE7_9ASPA; Trihelix transcription factor GT-2
STRING	XP_002518968.1	1e-172	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-69	Trihelix family protein