PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_10162

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

NF-YC

Protein Properties

Length: 106aa MW: 11816.9 Da PI: 10.4792

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_10162	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	61.6	1.6e-19	7	86	19	98
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P +rikki++adedv +i+ +P l+ska elf+ +l r++ + ++ +tl+ ++++v+ fdfl+ +v + PEQU_10162 7 TRFPASRIKKIMQADEDVGKIALAVPLLVSKALELFLQDLCNRTYEVTLQSGAKTLNSLHLKQCVKMYSAFDFLTAVVNK 86 579***********************************************************************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	6.46E-19	3	87	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	5.2E-26	3	72	IPR009072	Histone-fold
Pfam	PF00808	1.2E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MRKKLGTRFP ASRIKKIMQA DEDVGKIALA VPLLVSKALE LFLQDLCNRT YEVTLQSGAK 60 TLNSLHLKQC VKMYSAFDFL TAVVNKVPTL GGTESFGDEK GITRRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-23	2	73	5	76	Transcription Regulator NC2 alpha chain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020586770.1	2e-72	dr1-associated corepressor-like isoform X1
Refseq	XP_020586771.1	2e-72	dr1-associated corepressor-like isoform X2
Swissprot	Q2YDP3	4e-28	NC2A_BOVIN; Dr1-associated corepressor
TrEMBL	A0A2I0W1E1	7e-65	A0A2I0W1E1_9ASPA; Nuclear transcription factor Y subunit C-3
STRING	XP_008782237.1	2e-64	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2172	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-51	nuclear factor Y, subunit C11