PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_09643 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 188aa MW: 20671.6 Da PI: 8.3379 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.5 | 4.6e-20 | 73 | 121 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r r +lg+f taeeAa+a+++a+ +++g PEQU_09643 73 YRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFETAEEAARAYDNAAIEFRG 121 9*******.**********82....48************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.3E-36 | 72 | 135 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.882 | 72 | 129 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-22 | 72 | 130 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.3E-32 | 72 | 129 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-13 | 73 | 121 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.07E-31 | 73 | 129 | No hit | No description |
PRINTS | PR00367 | 1.3E-11 | 73 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 95 | 111 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MVNALIHVIS GNPDAAAPPI SIPVGGDLPL CQLCGRGIEG CLGCHFFESS ATITAEVAGT 60 VVRKRRREKK NLYRGVRQRP WGKWAAEIRD PRRAVRKWLG TFETAEEAAR AYDNAAIEFR 120 GARAKLNFPF PDQILMGRRN EVGMDSTPAT GVARGSGEDM GGFWDGLSEL VKLDDVEQNG 180 NWMMIGHF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 69 | 130 | 2 | 64 | ATERF1 |
3gcc_A | 2e-21 | 69 | 130 | 2 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 62 | 66 | RKRRR |
2 | 62 | 68 | RKRRREK |
3 | 62 | 69 | RKRRREKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020580870.1 | 1e-138 | ethylene-responsive transcription factor ERF109-like | ||||
TrEMBL | A0A1S6YG18 | 1e-136 | A0A1S6YG18_PHAEQ; Uncharacterized protein | ||||
STRING | BRADI3G38140.1 | 1e-47 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 1e-25 | redox responsive transcription factor 1 |