PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_09596
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family bHLH
Protein Properties Length: 284aa    MW: 32531.8 Da    PI: 5.2771
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_09596genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12101152155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N  ++ Lr+l+P++   + ++ + a+i   A++++++L+
  PEQU_09596 101 QRMTHIAVERNRRKQMNYYLALLRSLMPPS---YVQRGDQASIISGAINFVRELE 152
                 79****************************...9*****************9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.06E-1199156No hitNo description
SuperFamilySSF474591.57E-1599165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-12100154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.735100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-10101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-8106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MALEAVVFPQ NLLSCNVKEF YGLTEEEEEQ AFYGNWEVAY SSLAQGFEEW NTYSSNLTPP  60
RHEFECTANV AAAAGVEEER SGRKKRRRNK TSKNEEEVKN QRMTHIAVER NRRKQMNYYL  120
ALLRSLMPPS YVQRGDQASI ISGAINFVRE LEQFLQFLEV QKHLKQQIKT EEQDVSSPIN  180
PLTNFFTSPQ YTSPPSAAAI EVGIVESHAN LKLLSRRQPK QLPGLQNLQL TILHLNVTSV  240
EPMVLYCFSL KVEDDCRLNS VDEIAAAVHE IVLKNQEEEE ILLR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101112RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020580908.10.0transcription factor bHLH96-like
SwissprotQ9C7T42e-66BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2I0W4671e-160A0A2I0W467_9ASPA; Transcription factor bHLH94
STRINGXP_010272971.11e-94(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.13e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]