PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_09454 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | HSF | ||||||||
Protein Properties | Length: 440aa MW: 49780.3 Da PI: 5.139 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115 | 4.7e-36 | 12 | 103 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+ye+++d+++++++sws+ g+sf+v++++ f++++LpkyFkh+nf+SFvRQLn+YgF+k++ e+ weF++++F++g+k+ll++i+ PEQU_09454 12 FLTKTYEMVDDSTTDSVVSWSNAGDSFIVWNTTVFSRDLLPKYFKHNNFSSFVRQLNTYGFRKIDPEQ---------WEFANEEFTRGQKHLLSNIH 99 9***************************************************************9998.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k PEQU_09454 100 RRKP 103 *985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 4.62E-35 | 7 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.1E-60 | 8 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.5E-38 | 8 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.3E-20 | 12 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.3E-31 | 12 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-20 | 50 | 62 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 51 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-20 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
VMEGGSNSPP PFLTKTYEMV DDSTTDSVVS WSNAGDSFIV WNTTVFSRDL LPKYFKHNNF 60 SSFVRQLNTY GFRKIDPEQW EFANEEFTRG QKHLLSNIHR RKPVHSHSLQ AQVGASPSLS 120 EAERYELEGK IERLRRDKSS LVLELNKHIE QQNGVERKML SLEEKMQFLL DRQRDIMEFL 180 SNIVQIPGFL SNIVQQPEFH SKKRRLLIQD SIQDDPEKNQ IYDIQPTTTQ KSETSSAQAF 240 DLVPFEKMES TLNTLESFLR SVTLASTGEV HYDCSTVLPY AVLPTDSARE NVVNSPSSSP 300 KMHPSSPCVG DFRSSLDLTD STSYAENSGV SLSEVPRTLR VNISDIDVNS APAAPDPRLS 360 RDSTNGAGTS VPTGGNDVFW QQFFTETPGS DMQEVQSERK ELGERRTEVS KVEWGNHWWN 420 RKNVDHLAEK IGQLTPAESV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-25 | 2 | 101 | 11 | 120 | Heat shock factor protein 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020571203.1 | 0.0 | heat stress transcription factor A-4b-like | ||||
Refseq | XP_020571204.1 | 0.0 | heat stress transcription factor A-4b-like | ||||
Refseq | XP_020571205.1 | 0.0 | heat stress transcription factor A-4b-like | ||||
TrEMBL | A0A2I0WAG0 | 0.0 | A0A2I0WAG0_9ASPA; Heat stress transcription factor A-4b | ||||
STRING | XP_008776668.1 | 1e-165 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3296 | 37 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18880.1 | 1e-78 | heat shock transcription factor A4A |