PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_08850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | G2-like | ||||||||
Protein Properties | Length: 283aa MW: 31327.6 Da PI: 7.8219 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.3 | 2.7e-31 | 85 | 138 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFv+av++L G ++A+Pkti++lm+v+gLt+e+v+SHLQkYRl PEQU_08850 85 KPRLVWTPELHKRFVDAVAHL-GVKNAVPKTIMQLMNVDGLTRENVASHLQKYRL 138 79*******************.9*******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.439 | 82 | 141 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.73E-21 | 83 | 142 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-31 | 84 | 142 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.0E-25 | 85 | 138 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-9 | 88 | 137 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MREAVEPNWF AQWENELPSP EDLIPLSQSL ITPNLALLFN LSTPNPSSAF PLPPPPEFST 60 ATLSTTPESI STGYADDEPA RALKKPRLVW TPELHKRFVD AVAHLGVKNA VPKTIMQLMN 120 VDGLTRENVA SHLQKYRLYL KRSQGLSSSA SGPAISAADA AMEHLFSSYP IPHPLIRRDG 180 SVQENYMPFL SPPLFQRHQR MSSEAAQNQL FYHRRQMGYF GSVSDFGLLA RGGAERFGFH 240 RMGVMMQPPK ATSLPDSYGA EMDACSGGAG RRVLSLFPTK NED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 4e-32 | 85 | 141 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020585843.1 | 0.0 | transcription factor PCL1-like | ||||
Swissprot | O22210 | 1e-48 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A2I0WU52 | 1e-122 | A0A2I0WU52_9ASPA; Two-component response regulator ARR1 | ||||
STRING | GSMUA_Achr8P05880_001 | 2e-74 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1620 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05090.1 | 4e-54 | G2-like family protein |
Publications ? help Back to Top | |||
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