PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_08767 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | B3 | ||||||||
Protein Properties | Length: 211aa MW: 25204 Da PI: 7.9229 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.7 | 1.6e-16 | 95 | 187 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SS.SEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgr.sef 90 f k+l+ dv +++++lp + + ++ +++++++ + ++d++++sW++kl++ ++ +y++t+GW++F k+ +L+++D+v+F+ + ++ ++f PEQU_08767 95 FHKELLLIDVEIQNLFILPHQAI-SCfesFNSNTGPIWIEFKDRTNQSWKFKLCFVHTPPQYMFTEGWNNFFKEMELCVNDIVLFYqY-KDqQNF 187 778888999999**9****9998.55588556689***************************************************33.332544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-17 | 92 | 186 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.98E-11 | 94 | 179 | No hit | No description |
SuperFamily | SSF101936 | 2.75E-15 | 94 | 185 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.375 | 95 | 201 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.6E-4 | 95 | 194 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-13 | 95 | 187 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MSEIAAARAY DSASHMLSGN TFFRNLLLTN VTIHEPSFQS LYSNEVIFNM IRDGSYEPNY 60 IHFLSKNCPN FHYCESVVMP TLLDVKKGFI FKEMFHKELL LIDVEIQNLF ILPHQAISCF 120 ESFNSNTGPI WIEFKDRTNQ SWKFKLCFVH TPPQYMFTEG WNNFFKEMEL CVNDIVLFYQ 180 YKDQQNFPHR FSYMIDVIRG VRSPRMQRRR R |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020585858.1 | 1e-159 | AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
Refseq | XP_020585859.1 | 1e-159 | AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
Refseq | XP_020585860.1 | 1e-159 | AP2/ERF and B3 domain-containing transcription factor At1g51120-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 7e-25 | RAV family protein |