PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_08757 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | B3 | ||||||||
Protein Properties | Length: 156aa MW: 18898.8 Da PI: 6.507 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.3 | 1.6e-14 | 47 | 133 | 2 | 86 |
EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 k+lt+ d ++++l+lp+ + + ++ + ++ l ++d+ +++W + +iy + +++v+t GW+ Fv++ +L+++D+vvF++ + PEQU_08757 47 HKELTSTDLENQNMLILPNYVLPFFppfRSD-RAQFWLEFNDRMNKTWAFHYIYMTRIQSFVITMGWSLFVNEMELRAKDIVVFYVCS 133 5888888999999999998888666996444.56789*****************9999**************************9654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 1.49E-9 | 44 | 130 | No hit | No description |
SuperFamily | SSF101936 | 3.92E-13 | 45 | 136 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-16 | 45 | 135 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.896 | 46 | 146 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-12 | 47 | 134 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MIMDGSYEHR LIQFVSNQHR AYCYSDSIAM PTCLDTFQGV FYKKIYHKEL TSTDLENQNM 60 LILPNYVLPF FPPFRSDRAQ FWLEFNDRMN KTWAFHYIYM TRIQSFVITM GWSLFVNEME 120 LRAKDIVVFY VCSDRRIYPE EFFDMIDIIR GVRISQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020585808.1 | 1e-115 | AP2/ERF and B3 domain-containing transcription factor At1g51120-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19711 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 3e-18 | RAV family protein |