PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_08753 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | B3 | ||||||||
Protein Properties | Length: 172aa MW: 19888.3 Da PI: 4.2198 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.5 | 2.9e-19 | 46 | 139 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 f vlt+sdv + g+l+lp + a ++ +++++ l+++d++ r W ++++y+++ g+yvl++GW +F + +L+++D+vvF++ ++ ++f PEQU_08753 46 FRVVLTSSDVERPGILTLPAEQAVQYfppLTSETQHEFLQFYDRWQRLWVFQYCYSGSAGSYVLAGGWDSFLIDMQLEVNDVVVFYRCKEwRNF 139 77899***********************9444567778************************************************87765665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.0E-21 | 43 | 134 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.12E-17 | 45 | 132 | No hit | No description |
SuperFamily | SSF101936 | 4.51E-20 | 45 | 136 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.728 | 46 | 150 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-7 | 46 | 145 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.8E-16 | 46 | 139 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MIRNGSYEPK FIEFVRMFYP EFDDSGSVAL PDASDSFNGV FVKEMFRVVL TSSDVERPGI 60 LTLPAEQAVQ YFPPLTSETQ HEFLQFYDRW QRLWVFQYCY SGSAGSYVLA GGWDSFLIDM 120 QLEVNDVVVF YRCKEWRNFP PLSTDVIDAV RGVTSRCDVQ EDIHVEESTS RV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020585902.1 | 1e-125 | AP2/ERF and B3 domain-containing transcription factor At1g51120-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 3e-19 | RAV family protein |