PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_08731 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | LBD | ||||||||
Protein Properties | Length: 191aa MW: 20650.7 Da PI: 7.4227 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132 | 2.5e-41 | 33 | 131 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C+++C lapyfp ++p kf ++h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdP+yG++g i klq+q+ +l+a+la++++ PEQU_08731 33 PCAACKILRRRCVDKCLLAPYFPPTDPLKFTVAHRVFGASNIIKFLQDLPEVHRADAVSSMVYEANARLRDPIYGCAGAICKLQKQVTKLQAQLARTRA 131 7**********************************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.359 | 32 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.8E-41 | 33 | 130 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MNLIDATSSS TSSPSPSPSP PLLTLTPPTI LSPCAACKIL RRRCVDKCLL APYFPPTDPL 60 KFTVAHRVFG ASNIIKFLQD LPEVHRADAV SSMVYEANAR LRDPIYGCAG AICKLQKQVT 120 KLQAQLARTR ADLLHVQTQH ANFLALLMAP SSLHPSPTID QSTFASPEFS YEGDGGDGGG 180 YAPIWEDSLW A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-39 | 26 | 134 | 4 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-39 | 26 | 134 | 4 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020585962.1 | 1e-139 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 4e-64 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2I0XE83 | 1e-91 | A0A2I0XE83_9ASPA; LOB domain-containing protein 1 | ||||
STRING | XP_008795252.1 | 2e-73 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 2e-61 | LOB domain-containing protein 11 |