PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_08358
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HD-ZIP
Protein Properties Length: 380aa    MW: 42861.5 Da    PI: 5.788
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_08358genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-18159212356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k++++  +q++ Le++Fe +++++ e++ +L+k+lgL+ rqV +WFqNrRa++k
  PEQU_08358 159 KKRRLAVDQVKFLERFFELDNKLDPERKIQLSKELGLQPRQVAIWFQNRRARWK 212
                 55678899*********************************************9 PP
2HD-ZIP_I/II121.63.9e-39158247190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  ekkrrl+ +qvk+LE+ Fe ++kL+perK +l++eLglqprqva+WFqnrRAR+ktkqlEkdye+Lk++y++lk++ e+L ke+e L++e
   PEQU_08358 158 EKKRRLAVDQVKFLERFFELDNKLDPERKIQLSKELGLQPRQVAIWFQNRRARWKTKQLEKDYESLKANYNSLKADYENLLKEKEILQSE 247
                  69***********************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.33E-18154216IPR009057Homeodomain-like
PROSITE profilePS5007116.908154214IPR001356Homeobox domain
SMARTSM003891.4E-19157218IPR001356Homeobox domain
PfamPF000465.3E-16159212IPR001356Homeobox domain
CDDcd000861.63E-17159215No hitNo description
Gene3DG3DSA:1.10.10.601.3E-18166213IPR009057Homeodomain-like
PRINTSPR000315.1E-5185194IPR000047Helix-turn-helix motif
PROSITE patternPS000270189212IPR017970Homeobox, conserved site
PRINTSPR000315.1E-5194210IPR000047Helix-turn-helix motif
PfamPF021837.3E-15214255IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MPNPNRKQRD RERGSVLEVR ANSALLFPTN LILRFALFIV KNLFPQGMGL GSSFKVGFCH  60
ASVIKKEKSD LFNQFVELNL VKLKRVEMLG RRVHGGSKVA VLLQKEGVSP DTIQALLGSS  120
SGGFQASTSM LNFEDVCRRL DAEEVGDEDA EEYLHQPEKK RRLAVDQVKF LERFFELDNK  180
LDPERKIQLS KELGLQPRQV AIWFQNRRAR WKTKQLEKDY ESLKANYNSL KADYENLLKE  240
KEILQSEAAH LTNKLLLKEN TEAFLKLEES SPPSPKPESD SSSKAAIMNA GVSPVLRFKQ  300
EDLSSTNSVV IDSDSPHCAD EVGRSQLFEP AVSSNVFEPD LSDVSHAGGE VEPYNFLKPG  360
DGSNDYGFPV DDQAFMFWPY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206214RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020572471.10.0homeobox-leucine zipper protein HAT5-like isoform X2
TrEMBLA0A2I0VJH31e-159A0A2I0VJH3_9ASPA; Homeobox-leucine zipper protein HAT5
STRINGXP_008793499.12e-91(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16055714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.18e-39homeobox 1