PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_08206 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | GATA | ||||||||
Protein Properties | Length: 256aa MW: 28115.5 Da PI: 7.2856 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.1 | 3.8e-16 | 196 | 233 | 1 | 36 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 C++Cg + Tp++Rrgp+g++tLCnaCGl ++ kg++ PEQU_08206 196 CHHCGISAksTPMMRRGPNGPRTLCNACGLVWANKGTM 233 *****77777*************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 15.576 | 60 | 95 | IPR010399 | Tify domain |
SMART | SM00979 | 1.1E-12 | 60 | 95 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.2E-13 | 63 | 94 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.473 | 122 | 164 | IPR010402 | CCT domain |
Pfam | PF06203 | 4.1E-16 | 122 | 164 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 10.475 | 190 | 247 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.5E-13 | 190 | 243 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.6E-15 | 195 | 237 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 5.23E-12 | 195 | 247 | No hit | No description |
Pfam | PF00320 | 7.5E-14 | 196 | 233 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 196 | 223 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.07E-16 | 196 | 249 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MGSDGQGILR YAREHEENDE GGVGHGMGED HDGMMESEEM EGDGPSDPGH PGDPQGMIVP 60 HGGSNQLTLS FQGEVYVFDS VSPEKVQAVL LLLGGREIST GLAAFPSTAD LTTKQRSTLP 120 HRVASLMRFR EKRKERNFDK KIRYTVRKEV ALRMQRSRGQ FISSKSKSED ATSDVNAWTN 180 QHWDSVEKQP PSAADCHHCG ISAKSTPMMR RGPNGPRTLC NACGLVWANK GTMRDLSKNP 240 STPIQTRLPE AKDLVS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00369 | DAP | Transfer from AT3G21175 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020572684.1 | 0.0 | GATA transcription factor 20-like | ||||
Swissprot | Q5Z4U5 | 5e-94 | GAT20_ORYSJ; GATA transcription factor 20 | ||||
TrEMBL | A0A2I0WLX7 | 1e-164 | A0A2I0WLX7_9ASPA; GATA transcription factor 28 | ||||
STRING | XP_008799475.1 | 1e-115 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4325 | 38 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 1e-77 | ZIM-like 1 |