PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_07939 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | TALE | ||||||||
Protein Properties | Length: 439aa MW: 49469.5 Da PI: 7.5344 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.8 | 4.3e-09 | 246 | 283 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + PEQU_07939 246 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 283 664459******************************88 PP | |||||||
2 | BELL | 110 | 1.3e-35 | 101 | 170 | 3 | 72 |
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 elqk+kakLls+leeVd+rY++y+eq+++v+ +Fe++ag g+a+ Y +lA+ka+SrhFrcL+d ia+qi PEQU_07939 101 SELQKRKAKLLSMLEEVDRRYRRYCEQMKAVVLAFEEIAGEGAARTYSQLASKAMSRHFRCLRDGIAGQI 170 69*******************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.4E-47 | 42 | 168 | IPR006563 | POX domain |
Pfam | PF07526 | 3.0E-41 | 48 | 167 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.115 | 224 | 287 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-9 | 227 | 291 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.55E-11 | 227 | 288 | No hit | No description |
SuperFamily | SSF46689 | 9.84E-18 | 228 | 294 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-28 | 230 | 294 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.3E-18 | 244 | 283 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
VRGGGRPSAW PMESLHANQI QSLSLSLYNP PQPPSFHHHL SSPHPFHIKS CKYLLPTQEL 60 INEFCSLGDG NSSRRRSNSA KPMEDSSSSW SQQSLYSMEP SELQKRKAKL LSMLEEVDRR 120 YRRYCEQMKA VVLAFEEIAG EGAARTYSQL ASKAMSRHFR CLRDGIAGQI KATRRAMGEN 180 EAAAATVTTA VAAGLTRGET PRLKLLDQCI RQQKAFQQAG MIESHPWRPQ RGLPDRSVSI 240 LRAWLFEHFL HPYPSDVDKH ILARQTGLSR SQVSNWFINA RVRLWKPMIE EMYMEELKEE 300 DKNSQSSHAT TMQEAGNCSN NPYSNPNPNP NPSPTSQPPF EDHKSLSSII NNINAHHHNP 360 NIGNPSQTYG ILETDFGSYH GGHELTLSLQ QHERPLLFTR ELAIGDEGDE VQFSILEGET 420 QNIPYRNLMG AQLLHDLAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-15 | 233 | 291 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-15 | 233 | 291 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020581567.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 1e-108 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | A0A2I0X2D7 | 0.0 | A0A2I0X2D7_9ASPA; Homeobox protein BEL1 like | ||||
STRING | XP_006476516.1 | 1e-157 | (Citrus sinensis) | ||||
STRING | XP_008796900.1 | 1e-157 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6398 | 35 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 4e-88 | TALE family protein |
Publications ? help Back to Top | |||
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