PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_07434 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | Dof | ||||||||
Protein Properties | Length: 220aa MW: 23863.8 Da PI: 8.032 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 111.6 | 3.8e-35 | 11 | 66 | 5 | 60 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 lkcprC+stntkfCyynnys sqPr+fC+aCrr+Wt+GG+lrn+P+Gg+r+++++ PEQU_07434 11 LLKCPRCESTNTKFCYYNNYSRSQPRHFCRACRRHWTEGGTLRNIPIGGSRKNKRR 66 689********************************************987655544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-20 | 1 | 59 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.0E-31 | 12 | 65 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.242 | 12 | 66 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 14 | 50 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
KGQEEKNSAP LLKCPRCEST NTKFCYYNNY SRSQPRHFCR ACRRHWTEGG TLRNIPIGGS 60 RKNKRRKTTP TTTSSVSTSA ANPIAPVIEE MKGSIFPNIL RQALLLPPPP PLQSPTIDGL 120 NGLFSTSLPN ASLMFMEDLN GMSSGLVSPS CSFSSQYSWR GVQGVGGGCK DGLLGTMDAT 180 TASTWEMKET GFPASYWDYW DGGSGDLNDA DAGEVDPLLP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020577457.1 | 1e-162 | dof zinc finger protein DOF3.1-like | ||||
TrEMBL | A0A2I0VLB8 | 4e-92 | A0A2I0VLB8_9ASPA; Dof zinc finger protein DOF5.3 | ||||
STRING | XP_008790500.1 | 7e-40 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38000.1 | 7e-27 | DNA binding with one finger 4.7 |