PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_07244 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 228aa MW: 25461 Da PI: 7.9482 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.8 | 6.7e-24 | 10 | 56 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 +i n + rqvtfskRr g++KKAeEL +LCdaev +i+fs tgkl++ PEQU_07244 10 KIANATARQVTFSKRRRGLFKKAEELAILCDAEVGLIVFSATGKLFD 56 699******************************************86 PP | |||||||
2 | K-box | 59 | 1.9e-20 | 90 | 171 | 18 | 99 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + +l+ L +++ + r++R++ GedL+ L+++eLq+Le+ Le++l+++ +kK e ++eqi+ l++k +l een++Lr +++ PEQU_07244 90 NGNLTILSNQVAEATRQLRNMRGEDLNGLTIQELQELEKTLETGLSRVTQKKGEQIMEQIKGLRNKGIQLMEENTKLRYQVA 171 556777899999999***************************************************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.006 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.3E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-29 | 1 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.12E-38 | 2 | 75 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.3E-24 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.366 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.4E-17 | 92 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048438 | Biological Process | floral whorl development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000900 | Molecular Function | translation repressor activity, nucleic acid binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MAREKIKIRK IANATARQVT FSKRRRGLFK KAEELAILCD AEVGLIVFSA TGKLFDLSNT 60 SMKEIIDRYN THSKNTTAGD LPSLDLQLEN GNLTILSNQV AEATRQLRNM RGEDLNGLTI 120 QELQELEKTL ETGLSRVTQK KGEQIMEQIK GLRNKGIQLM EENTKLRYQV AKMSNAGKQV 180 VVDLENALHE DGQSSESVTN VTHCGNLYEN EDTSDTCLKL GLSCSGWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-18 | 1 | 73 | 1 | 73 | MEF2C |
5f28_B | 7e-18 | 1 | 73 | 1 | 73 | MEF2C |
5f28_C | 7e-18 | 1 | 73 | 1 | 73 | MEF2C |
5f28_D | 7e-18 | 1 | 73 | 1 | 73 | MEF2C |
6byy_A | 9e-18 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 9e-18 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 9e-18 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 9e-18 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 9e-18 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 9e-18 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 9e-18 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 9e-18 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00272 | DAP | Transfer from AT2G22540 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020575639.1 | 1e-166 | MADS-box transcription factor 22 | ||||
Refseq | XP_020575640.1 | 1e-166 | MADS-box transcription factor 22 | ||||
Swissprot | Q9XJ66 | 7e-85 | MAD22_ORYSJ; MADS-box transcription factor 22 | ||||
TrEMBL | A0A2I7M8C5 | 1e-165 | A0A2I7M8C5_9ASPA; SVP | ||||
STRING | VIT_00s0313g00070.t01 | 1e-93 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1221 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-70 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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