PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_06718
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 370aa    MW: 40068 Da    PI: 7.2244
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_06718genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2713.7e-831136314373
        GRAS  14 sgdlelaqalLarlsel....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleaveg 108
                 +++ +la+ +Larl+el    +s + + +qRl a+ft AL a l +          p + + ++ se+l+a k f+++sP+  f+hltaNqaIlea++g
  PEQU_06718  11 QKSPHLARVILARLKELvptdQSFTSSGIQRLSAHFTDALLALLDN----------PHQLH-YSASEVLTASKSFHDMSPCASFGHLTANQAILEAIAG 98 
                 455569***********54444444569****************99..........44443.56789999***************************** PP

        GRAS 109 eervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnl 206
                 e+r+H++D+di++G+QW++++qaL+s p   +p+lRiT++++ ++gs+ + +e+g+rL+ fA+++g pf+f++   ++++ +++ + ++ +gEal+ n+
  PEQU_06718  99 ERRIHVLDYDIGEGVQWASFMQALSSNPnTAAPHLRITAISNGTKGSASASQEVGRRLSAFAATIGQPFSFRIARLDQTKIFTPAAVKIVKGEALVANC 197
                 **************************9967799***********9****************************9999********************** PP

        GRAS 207 vlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
                 vl+  +l  + +sl+s    +L     l ++v++v+e+e   ++  +++ ++ +f + le y+a+ +slea++p +++ r +vEr++l+++i  +v+ +
  PEQU_06718 198 VLHPAQLC-SAASLAS----FLTGAAALGARVLTVIEEEsgsVEArEEKGLVGEFRDELERYMAIWESLEAGYPMQARVREMVERVILKPRIAAAVMRA 291
                 **999998.6666666....*******************55434446779************************************************* PP

        GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaW 373
                   +++ r+  +e+  e++ ++GF+ v ls ++++qa+lll  ++  gy ve ee + l l+Wk+ +L+s+S+W
  PEQU_06718 292 YGRKEGREGVAERCGEWMAAVGFQRVGLSFFNVCQAQLLLGLFN-GGYCVErEEMNKLALCWKSCRLLSASVW 363
                 ***9****************************************.89****788999**************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.5651344IPR005202Transcription factor GRAS
PfamPF035141.3E-8011363IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MAPAEALSGD QKSPHLARVI LARLKELVPT DQSFTSSGIQ RLSAHFTDAL LALLDNPHQL  60
HYSASEVLTA SKSFHDMSPC ASFGHLTANQ AILEAIAGER RIHVLDYDIG EGVQWASFMQ  120
ALSSNPNTAA PHLRITAISN GTKGSASASQ EVGRRLSAFA ATIGQPFSFR IARLDQTKIF  180
TPAAVKIVKG EALVANCVLH PAQLCSAASL ASFLTGAAAL GARVLTVIEE ESGSVEAREE  240
KGLVGEFRDE LERYMAIWES LEAGYPMQAR VREMVERVIL KPRIAAAVMR AYGRKEGREG  300
VAERCGEWMA AVGFQRVGLS FFNVCQAQLL LGLFNGGYCV EREEMNKLAL CWKSCRLLSA  360
SVWAVPPPPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-354036357378Protein SCARECROW
5b3h_A2e-354036356377Protein SCARECROW
5b3h_D2e-354036356377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020584540.10.0nodulation-signaling pathway 2 protein-like, partial
SwissprotQ5NE241e-114NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2I0XHV41e-148A0A2I0XHV4_9ASPA; Nodulation-signaling pathway 2 protein
STRINGGRMZM2G055263_P011e-128(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.16e-92GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]