PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_06718 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | GRAS | ||||||||
Protein Properties | Length: 370aa MW: 40068 Da PI: 7.2244 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 271 | 3.7e-83 | 11 | 363 | 14 | 373 |
GRAS 14 sgdlelaqalLarlsel....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleaveg 108 +++ +la+ +Larl+el +s + + +qRl a+ft AL a l + p + + ++ se+l+a k f+++sP+ f+hltaNqaIlea++g PEQU_06718 11 QKSPHLARVILARLKELvptdQSFTSSGIQRLSAHFTDALLALLDN----------PHQLH-YSASEVLTASKSFHDMSPCASFGHLTANQAILEAIAG 98 455569***********54444444569****************99..........44443.56789999***************************** PP GRAS 109 eervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnl 206 e+r+H++D+di++G+QW++++qaL+s p +p+lRiT++++ ++gs+ + +e+g+rL+ fA+++g pf+f++ ++++ +++ + ++ +gEal+ n+ PEQU_06718 99 ERRIHVLDYDIGEGVQWASFMQALSSNPnTAAPHLRITAISNGTKGSASASQEVGRRLSAFAATIGQPFSFRIARLDQTKIFTPAAVKIVKGEALVANC 197 **************************9967799***********9****************************9999********************** PP GRAS 207 vlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 vl+ +l + +sl+s +L l ++v++v+e+e ++ +++ ++ +f + le y+a+ +slea++p +++ r +vEr++l+++i +v+ + PEQU_06718 198 VLHPAQLC-SAASLAS----FLTGAAALGARVLTVIEEEsgsVEArEEKGLVGEFRDELERYMAIWESLEAGYPMQARVREMVERVILKPRIAAAVMRA 291 **999998.6666666....*******************55434446779************************************************* PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaW 373 +++ r+ +e+ e++ ++GF+ v ls ++++qa+lll ++ gy ve ee + l l+Wk+ +L+s+S+W PEQU_06718 292 YGRKEGREGVAERCGEWMAAVGFQRVGLSFFNVCQAQLLLGLFN-GGYCVErEEMNKLALCWKSCRLLSASVW 363 ***9****************************************.89****788999**************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 40.565 | 1 | 344 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-80 | 11 | 363 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MAPAEALSGD QKSPHLARVI LARLKELVPT DQSFTSSGIQ RLSAHFTDAL LALLDNPHQL 60 HYSASEVLTA SKSFHDMSPC ASFGHLTANQ AILEAIAGER RIHVLDYDIG EGVQWASFMQ 120 ALSSNPNTAA PHLRITAISN GTKGSASASQ EVGRRLSAFA ATIGQPFSFR IARLDQTKIF 180 TPAAVKIVKG EALVANCVLH PAQLCSAASL ASFLTGAAAL GARVLTVIEE ESGSVEAREE 240 KGLVGEFRDE LERYMAIWES LEAGYPMQAR VREMVERVIL KPRIAAAVMR AYGRKEGREG 300 VAERCGEWMA AVGFQRVGLS FFNVCQAQLL LGLFNGGYCV EREEMNKLAL CWKSCRLLSA 360 SVWAVPPPPE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-35 | 40 | 363 | 57 | 378 | Protein SCARECROW |
5b3h_A | 2e-35 | 40 | 363 | 56 | 377 | Protein SCARECROW |
5b3h_D | 2e-35 | 40 | 363 | 56 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020584540.1 | 0.0 | nodulation-signaling pathway 2 protein-like, partial | ||||
Swissprot | Q5NE24 | 1e-114 | NSP2_MEDTR; Nodulation-signaling pathway 2 protein | ||||
TrEMBL | A0A2I0XHV4 | 1e-148 | A0A2I0XHV4_9ASPA; Nodulation-signaling pathway 2 protein | ||||
STRING | GRMZM2G055263_P01 | 1e-128 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7580 | 31 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 6e-92 | GRAS family protein |
Publications ? help Back to Top | |||
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