PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_06717
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 291aa    MW: 30762 Da    PI: 8.2256
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_06717genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS176.71.7e-54412422210
        GRAS   2 velLlecAeavss..gdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  +lL+++Ae ++   ++  l++ +Larl+el s    +++ Rlaa+ft AL++ l++s+    +a +p +     s e l a++l +++sP++kf+h+t
  PEQU_06717  41 LHLLIAAAESLTGslQSSDLTEVILARLKELLSCGCsSSIDRLAAHFTDALHSLLHGSG----NAASPPK----FSFEYLEAFQLMQDMSPYIKFGHFT 131
                 799******9998445666************8877769*******************22....2223333....47899******************** PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg..ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                 aNqaIleav+ge+rvHiiDfdi+ G+QW++L+qaL s ++g  pp+l+iT+v++    ++++++etg+rLa +A+++g+pf+f     ++ +++++   
  PEQU_06717 132 ANQAILEAVAGERRVHIIDFDITVGVQWASLMQALVSVSNGwhPPHLKITAVAR----NRKSVQETGRRLAAYAASIGLPFSFAQCRLDEDDQFRPTGV 226
                 ************************************99976669**********....99*************************9999********** PP

        GRAS 195 rvkpgEalaVnlvlql 210
                 +v +gE+++ n++lq 
  PEQU_06717 227 KVVRGEVVVFNCILQP 242
                 ************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.26914291IPR005202Transcription factor GRAS
PfamPF035146.0E-5241242IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MKSTVTISPK TSTTQSTPPS PPPPSAQQTP AAPTSTSLRL LHLLIAAAES LTGSLQSSDL  60
TEVILARLKE LLSCGCSSSI DRLAAHFTDA LHSLLHGSGN AASPPKFSFE YLEAFQLMQD  120
MSPYIKFGHF TANQAILEAV AGERRVHIID FDITVGVQWA SLMQALVSVS NGWHPPHLKI  180
TAVARNRKSV QETGRRLAAY AASIGLPFSF AQCRLDEDDQ FRPTGVKVVR GEVVVFNCIL  240
QPGSTAGGLS FIAGAAAAGL CGRRFVFYRR CCGDGGSGGD DCGRGGGGGW V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-267221748197Protein SCARECROW
5b3h_A2e-267221747196Protein SCARECROW
5b3h_D2e-267221747196Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020584539.11e-158LOW QUALITY PROTEIN: nodulation-signaling pathway 2 protein-like
SwissprotQ5NE245e-78NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2I0VPP46e-97A0A2I0VPP4_9ASPA; Nodulation-signaling pathway 2 protein
STRINGPOPTR_0005s15900.12e-82(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.18e-59GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]