PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_06673 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | GRAS | ||||||||
Protein Properties | Length: 143aa MW: 16024.6 Da PI: 9.248 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 27.4 | 4e-09 | 51 | 134 | 157 | 246 |
GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqea 246 e +etg++ + fA+++ ++f+f +r +++++ + +v +g a++ n++ h+ +++++ ++s +L + +kvv +ve+e PEQU_06673 51 EKKETGRKPTAFAASISLSFSFAQCRLDRKDCFRPTAVKVLNGKAIVFNCAP--HHKHHSPALIRS----FLTSTAEFGAKVVALVEEEG 134 5689********************9999**********************99..444434555555....******************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 1.4E-6 | 51 | 134 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
QGSSQLRCGL PGLQFDDPRL CVVDEWRVHI VDFDIRRELS GLRLCRLLCR EKKETGRKPT 60 AFAASISLSF SFAQCRLDRK DCFRPTAVKV LNGKAIVFNC APHHKHHSPA LIRSFLTSTA 120 EFGAKVVALV EEEGWAMAAE RKG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020586762.1 | 3e-42 | nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A2I0W1D6 | 5e-26 | A0A2I0W1D6_9ASPA; Nodulation-signaling pathway 2 protein | ||||
STRING | XP_004292683.1 | 1e-20 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 1e-09 | GRAS family protein |