PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_06107 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 200aa MW: 23790 Da PI: 9.3357 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.4 | 2.4e-18 | 38 | 90 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Le F+++r++ +++e LA++lgL+ +qV vWFqNrRa+ k PEQU_06107 38 KRRLSDEQVKLLEFSFRRERKLECRRKESLAMELGLDPKQVAVWFQNRRARLK 90 4579***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 107.3 | 1.1e-34 | 37 | 128 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krrls+eqvklLE sF++e+kLe +rK++la eLgl+p+qvavWFqnrRAR k++++E++y +Lk++ d+ + e+++Lekev +L+e+l+e PEQU_06107 37 RKRRLSDEQVKLLEFSFRRERKLECRRKESLAMELGLDPKQVAVWFQNRRARLKSRKIEEEYWRLKSENDEAVIEKCQLEKEVLKLKEKLSE 128 8***************************************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.358 | 32 | 92 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-14 | 35 | 96 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-16 | 35 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.28E-12 | 37 | 93 | No hit | No description |
Pfam | PF00046 | 1.5E-15 | 38 | 90 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-17 | 39 | 97 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.0E-5 | 63 | 72 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 67 | 90 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.0E-5 | 72 | 88 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MMVESYLMSS GLTDNTPQGG RRWRRQKKAE VRAVEGRKRR LSDEQVKLLE FSFRRERKLE 60 CRRKESLAME LGLDPKQVAV WFQNRRARLK SRKIEEEYWR LKSENDEAVI EKCQLEKEVL 120 KLKEKLSETE EEIKRLSIDT KRDENNSKAM ENSSPSFSAM NQQAVAKDIN AGGEQEYFIF 180 KHDFMYSNYW LSWGDDLFGM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020574037.1 | 1e-145 | homeobox-leucine zipper protein ATHB-21-like | ||||
TrEMBL | A0A2I0VRY4 | 2e-84 | A0A2I0VRY4_9ASPA; Homeobox-leucine zipper protein ATHB-21 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 1e-23 | homeobox protein 21 |