PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_06070
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 431aa    MW: 47200.5 Da    PI: 6.8191
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_06070genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.6e-06193213526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C  f+r G C+ Gd C +aHg
  PEQU_06070 193 PCVEFRR-GLCPKGDLCEYAHG 213
                 7999999.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5029712.806485IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.7E-9586IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.53E-8585IPR020683Ankyrin repeat-containing domain
CDDcd002044.65E-7682No hitNo description
PROSITE profilePS5010312.023188215IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5188214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4188215IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4221252IPR000571Zinc finger, CCCH-type
SMARTSM0035620223246IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MTILQRTPLM VAAAFGSLNV LHFIISLSAA MDVDIDFRCG PDAVTALHCV AAGGAPTASL  60
AATLLLIAGA DPNALDAVGR RPVELIPTSP ILSSLRSSLE AVLSNGSPPV TPSSDSTSSS  120
SSPQEKKKNY PIDSSIPDIQ SRIYSSDEFR MFSFKIKPCS RAYSHDWTEC PFVHPGENAR  180
RRDPRRFNYS CTPCVEFRRG LCPKGDLCEY AHGVFECWLH PAQYRTRLCK DGDSCSRRVC  240
FFAHSTSDLR SLPNSRSMAL PHLLVRIPRS NEFATANCAS PRFQPDYIPS NLSPMSRNQQ  300
HGILTPRTLN YMHCVLSPRS ISPNADGAGS VSYLLDSPAS ESGKLELQFQ QQQLMRSVIA  360
SNLKQDSENV NQELVEIEPD LSWVQSLVGN NEIGKGVSLG DGKALNSAID DEQATLGAWL  420
EQMQLDRKIV L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020573925.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937551e-99C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2I0VRX90.0A0A2I0VRX9_9ASPA; Zinc finger CCCH domain-containing protein 30
STRINGcassava4.1_002452m1e-106(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.12e-93CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]