PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_05693 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | LBD | ||||||||
Protein Properties | Length: 102aa MW: 10781.4 Da PI: 8.2882 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 110.5 | 1.2e-34 | 7 | 97 | 1 | 89 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC++dC++ap+f+ae + +fa++h++FGasn +kll+++p r +a+ +++yeA+ar++dPvyG+v++i +lq+q++ PEQU_05693 7 PCGACKFLRRKCTADCIFAPHFCAETgsSGAFAAIHRIFGASNTSKLLQHVPAGLRGEAALTIAYEAQARLSDPVYGCVAHIVALQKQVSY 97 7***********************8854699*********************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.628 | 6 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-34 | 7 | 98 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MAGSGSPCGA CKFLRRKCTA DCIFAPHFCA ETGSSGAFAA IHRIFGASNT SKLLQHVPAG 60 LRGEAALTIA YEAQARLSDP VYGCVAHIVA LQKQVSYCEL QY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-32 | 3 | 95 | 7 | 97 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-32 | 3 | 95 | 7 | 97 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020574802.1 | 7e-65 | LOB domain-containing protein 29-like | ||||
Swissprot | Q9SLB7 | 2e-43 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A2I0X4N7 | 2e-48 | A0A2I0X4N7_9ASPA; LOB domain-containing protein 16 | ||||
STRING | XP_009781596.1 | 4e-46 | (Nicotiana sylvestris) | ||||
STRING | XP_009617763.1 | 3e-46 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10262 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 8e-46 | lateral organ boundaries-domain 16 |